PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00194.1.g00350.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family DBB
Protein Properties Length: 362aa    MW: 37878.3 Da    PI: 6.1151
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00194.1.g00350.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.6e-05444539
                      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                   C+ +e  e++  C  ++  lC+ C    H        H +
  Zpz_sc00194.1.g00350.1.sm.mk  4 LCSACEAAEARVLCCADKAALCARCDRDVHAAnrlagkHHR 44
                                  7******99******************99955677778554 PP
2zf-B_box17.39.7e-06791111237
                      zf-B_box  12 ke.lqlfCedCqqllCedClleeHkg......H 37 
                                   ++ + +fC +++ llC++C ++ H        H
  Zpz_sc00194.1.g00350.1.sm.mk  79 EChAYFFCVEDRALLCRSCDVAVHTAnafvsaH 111
                                   33499*****************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-7147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.523147IPR000315B-box-type zinc finger
CDDcd000214.51E-7347No hitNo description
SMARTSM003362.0E-772116IPR000315B-box-type zinc finger
CDDcd000214.57E-678116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD KAALCARCDR DVHAANRLAG KHHRLPLLAP GAITAPNCDI  60
CQVPAASEPL SPASAAPQEC HAYFFCVEDR ALLCRSCDVA VHTANAFVSA HRRFLLTGVQ  120
VGLQPDAQET EQHTPTASTA AAAASLQTPP PPPPAKKRSS PAPLYSDDDI DWAAGPDGGL  180
SGNLPDWCVV DEQFNAPVQK SVDPVATKPP AKRSPRGAIV SAYGGQGGVT GGMQAWPLDE  240
FFGFSEFNAG LGLTENSTSK ADSGKLGSTD GSPNGWSSSD IAQDFFGQVP EVHHQWSVAE  300
LPSPPTASGL HWQGGPRHDR SATTDAAAMS VPDISSPGNP FRCFAADTGQ PLPAPPAKRR  360
RY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00194.1.g00350.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819038.11e-158B-box zinc finger protein 22-like
TrEMBLA0A0A9LRZ41e-172A0A0A9LRZ4_ARUDO; Uncharacterized protein
STRINGPavir.Eb00238.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-43light-regulated zinc finger protein 1