PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00187.1.g00600.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 273aa MW: 29329.6 Da PI: 9.4544 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 96.9 | 3.9e-30 | 45 | 119 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 g+kdrhsk+ T +g+RdRRvRlsa++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ + Zpz_sc00187.1.g00600.1.sm.mk 45 GGKDRHSKVKTVKGLRDRRVRLSAPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDLVvghL 119 78*************************************************************888883333221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.928 | 46 | 104 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.5E-27 | 46 | 108 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MISSNNRQAA DEELARKQHA AVASSRQQWS AQTESRIVRV SRVFGGKDRH SKVKTVKGLR 60 DRRVRLSAPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQFP PQDLVVGHLP 120 LVHEEKFGHH VAAAAALANE RAKAGHADAD VESGAHHHLG RFPGGYHRFM GLNSSLGMVN 180 SAMAAFNDYS GEAWNNNNVH DSGAGSPHVA AAAAAAAAAA QHSSFPSLLS LAPGPHQQVF 240 YSSEADQQFQ VGNLGSQGLS LSSVRAFHDQ TGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-20 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 8e-20 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00187.1.g00600.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085548 | 1e-113 | BT085548.1 Zea mays full-length cDNA clone ZM_BFc0031O04 mRNA, complete cds. | |||
GenBank | BT085813 | 1e-113 | BT085813.1 Zea mays full-length cDNA clone ZM_BFc0067G09 mRNA, complete cds. | |||
GenBank | BT086223 | 1e-113 | BT086223.1 Zea mays full-length cDNA clone ZM_BFc0133E08 mRNA, complete cds. | |||
GenBank | EU970217 | 1e-113 | EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds. | |||
GenBank | KJ728008 | 1e-113 | KJ728008.1 Zea mays clone pUT6143 TCP transcription factor (TCP30) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814168.1 | 1e-126 | transcription factor PCF5-like | ||||
Refseq | XP_025814169.1 | 1e-126 | transcription factor PCF5-like | ||||
TrEMBL | A0A3L6SMS6 | 1e-132 | A0A3L6SMS6_PANMI; Transcription factor PCF5-like | ||||
STRING | Pavir.J15913.1.p | 1e-126 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-41 | plastid transcription factor 1 |