PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00187.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 328aa    MW: 35515.9 Da    PI: 6.4388
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00187.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.55.9e-35103191183
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......ea 75 
                                   aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++ +  +a +       e+
  Zpz_sc00187.1.g00010.1.am.mk 103 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRPEAAAAAEaaaeatEQ 183
                                   689**************************************************************4444411111211222 PP

                           TCP  76 esssssas 83 
                                   ++++ s+s
  Zpz_sc00187.1.g00010.1.am.mk 184 GEQVTSTS 191
                                   22222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-32105214IPR005333Transcription factor, TCP
PROSITE profilePS5136932.615106164IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MASRFKLEED KNQLSEGLDP WSNNPTATTS TLHYLLQEKE RAQAQEQLQI YHHQGFSYLE  60
HHRRQQQNQS TGGAGCDGLS SGESTPVDAL TTAFGSGRIV RSAAGRKDRH SKVCTARGLR  120
DRRVRLAAHT AIRFYDVQDR LGYDRPSKAV DWLIRNAKAA IEELPDRPEA AAAAEAAAEA  180
TEQGEQVTST SYGFSNPGGA ITAVAGGSFV QHSGADERNQ RILSWHASEN STGDGRGGGN  240
GDSYMFGMQP QSQVLPQGEP LQSSGGWASA RTWLDPLTAI QQPSTMTGQV GFSHLIGGAG  300
FMGFLAPATT HQRLQCEEEQ GSEAMRRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-20111165155Putative transcription factor PCF6
5zkt_B6e-20111165155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00187.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721191e-159EU972119.1 Zea mays clone 375445 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972181.11e-119transcription factor PCF7
SwissprotQ8LT052e-81PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A3L6R0211e-138A0A3L6R021_PANMI; Uncharacterized protein
STRINGMLOC_12004.11e-135(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-32TCP family protein