PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00183.1.g00140.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 340aa    MW: 37547.9 Da    PI: 4.5151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00183.1.g00140.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1988137255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                      ++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa+a+++a+++++g
  Zpz_sc00183.1.g00140.1.sm.mkhc  88 EFRGVRQRT-WGKWVAEIREP---N-RiNRLWLGTFPTAEEAARAYDQAARAMYG 137
                                     59****999.**********8...3.46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.75E-3187145No hitNo description
PfamPF008471.5E-1388137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3188145IPR001471AP2/ERF domain
PROSITE profilePS5103222.22188145IPR001471AP2/ERF domain
SMARTSM003802.5E-3588151IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2189146IPR016177DNA-binding domain
PRINTSPR003672.1E-1089100IPR001471AP2/ERF domain
PRINTSPR003672.1E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTVDQKAAMP SQSQMQQVQP LQPGRKKRPR RSRDGPNSVT AVIQRWAQMN QELERNPEAA  60
KKPRKAPAKG SKKGCMKGKG GPENTFCEFR GVRQRTWGKW VAEIREPNRI NRLWLGTFPT  120
AEEAARAYDQ AARAMYGALA RTNFPSPVPT STQAIPAAVE VVQPVSVSCE STVTSNRSDI  180
VSSQKPDSDI SSTINSRGEP LETVPHEPKM KSDTLDQNDG GDLGPEAGTS SVADEVFEPL  240
EPIANLPLCD EGVFDIKELL RMMEADPQNK GSSDRTNEGG TEAEKEQLFF TDLDSSVLEN  300
MLQSEPEPEP WLISDDPDMY LTGFQNPDFF EGCDFLEGLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-16881461473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00183.1.g00140.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302434.11e-115dehydration-responsive element-binding protein 2B-like isoform X4
SwissprotQ5W6R45e-77DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A1N7TB580.0A0A1N7TB58_9POAL; Transcription factor DREB2.3
STRINGSi022619m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-27DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]