PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00181.1.g00250.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 33516.2 Da PI: 6.7501 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.3e-18 | 69 | 117 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Zpz_sc00181.1.g00250.1.am.mk 69 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 117 67******.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.547 | 68 | 125 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.80E-26 | 68 | 124 | No hit | No description |
SMART | SM00380 | 7.5E-30 | 68 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-28 | 69 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-20 | 69 | 126 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 69 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-11 | 71 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MAIGREIMIV VPGFVWLARA KESKLLQPEK GVKEGRPTTG PSPHGLHVAL PSHPKCPSPS 60 PLPXXXXRFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AQEAALAYDR AALSMKGAQA 120 RTNFVYSHTA YNYPPFLAPF HAQPSYGYAQ SSMHQYGGQH GMGASSHIGS YHPHYQAPAG 180 SGASSASGEC SMPVAVDRTD GSLLDGGHNF LFSSADDNSG YLSSVVPESC LRPRSSAAAA 240 EDMRRYSDAD AYGMMGLRED VDDLAQMVAG FWGDAGDAEQ LGACAFPAGG GHGGDIVSSS 300 QGSDAYSPFS FLSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-17 | 69 | 124 | 6 | 62 | ATERF1 |
3gcc_A | 4e-17 | 69 | 124 | 6 | 62 | ATERF1 |
5wx9_A | 5e-17 | 68 | 124 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00181.1.g00250.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036365 | 9e-99 | BT036365.1 Zea mays full-length cDNA clone ZM_BFb0108M21 mRNA, complete cds. | |||
GenBank | KJ727547 | 9e-99 | KJ727547.1 Zea mays clone pUT5407 AP2-EREBP transcription factor (EREB151) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804267.1 | 1e-118 | ethylene-responsive transcription factor FZP | ||||
Swissprot | Q8H3Q1 | 1e-111 | FZP_ORYSJ; Ethylene-responsive transcription factor FZP | ||||
TrEMBL | A0A1E5UMV0 | 1e-122 | A0A1E5UMV0_9POAL; Ethylene-responsive transcription factor ERF086 | ||||
STRING | Pavir.Ba00192.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10525 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 5e-40 | ERF family protein |