PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00172.1.g00050.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YC | ||||||||
Protein Properties | Length: 127aa MW: 13715.5 Da PI: 4.9777 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 102.4 | 3.2e-32 | 22 | 110 | 19 | 100 |
NF-YC 19 helPlarikkilk.......adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 h+lPlarikki+k ad +mis eaPv++skacelfi elt r+w + e krrt++k d+a+av +td fdfl Zpz_sc00172.1.g00050.1.sm.mk 22 HALPLARIKKIMKrsageatADGGARMISGEAPVVFSKACELFIAELTRRAWAATLEGKRRTVHKEDVAEAVRNTDLFDFL 102 89**********9555544447789******************************************************** PP NF-YC 93 vdivprde 100 vd v de Zpz_sc00172.1.g00050.1.sm.mk 103 VDLVTADE 110 ****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.01E-25 | 18 | 102 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.6E-32 | 19 | 94 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.1E-17 | 24 | 93 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MRQARPYSGI FCGGVSARTG PHALPLARIK KIMKRSAGEA TADGGARMIS GEAPVVFSKA 60 CELFIAELTR RAWAATLEGK RRTVHKEDVA EAVRNTDLFD FLVDLVTADE SDNAPAAGYD 120 DDDEAME |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-31 | 22 | 106 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00172.1.g00050.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958236 | 1e-113 | EU958236.1 Zea mays clone 1680099 nuclear transcription factor Y subunit C-9 mRNA, complete cds. | |||
GenBank | HQ234502 | 1e-113 | HQ234502.1 Zea mays clone BAC ZMMBBb0342E21 DNA-binding protein, peroxisomal-CoA synthetase, cleavage and polyadenylation specificity factor 5, DNA mismatch repair protein, and putative potassium efflux system protein family genes, complete cds; and unknown gene. | |||
GenBank | KJ727009 | 1e-113 | KJ727009.1 Zea mays clone pUT3990 CCAAT-HAP5 transcription factor (CA5P1) gene, partial cds. | |||
GenBank | KJ727010 | 1e-113 | KJ727010.1 Zea mays clone pUT3991 CCAAT-HAP5 transcription factor (CA5P2) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825631.1 | 7e-70 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 3e-31 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2S3IBP5 | 2e-68 | A0A2S3IBP5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D1W5 | 2e-68 | A0A2T7D1W5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PUG0 | 2e-68 | A0A3L6PUG0_PANMI; Nuclear transcription factor Y subunit C-2-like | ||||
STRING | Pavir.Ga00522.1.p | 7e-69 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11658 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-33 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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