PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00171.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 381aa    MW: 41457.3 Da    PI: 10.6496
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00171.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16119166148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+W +eEd++l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Zpz_sc00171.1.g00090.1.am.mk 119 KGAWNKEEDQRLIAYIKAHGEGSWRSLPKAAGLLRCGKSCRLRWMNYL 166
                                   79******************************99************97 PP
2Myb_DNA-binding54.82.1e-17172216147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++T+++del+++++++lG++ W++Ia  ++ gRt++++k++w+++
  Zpz_sc00171.1.g00090.1.am.mk 172 RGNFTEDDDELIIKLHALLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 216
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-22110169IPR009057Homeodomain-like
PROSITE profilePS5129415.94114166IPR017930Myb domain
SMARTSM007177.0E-13118168IPR001005SANT/Myb domain
SuperFamilySSF466891.13E-28118213IPR009057Homeodomain-like
PfamPF002492.1E-14119166IPR001005SANT/Myb domain
CDDcd001672.34E-10121166No hitNo description
PROSITE profilePS5129428.041167221IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-27170221IPR009057Homeodomain-like
SMARTSM007171.5E-16171219IPR001005SANT/Myb domain
PfamPF002491.5E-15172216IPR001005SANT/Myb domain
CDDcd001672.45E-12174217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MRAVKCRAPP PWGRVNQARK KSREGKGPNP PVFPPRTRLA PIYTRTFPAS LHLSFPCCDN  60
QLHQRCSGIG LQANSARRSK EDSSAKEQRK HLRCAGGEAR RRRPIMGRSP CCEKAHTNKG  120
AWNKEEDQRL IAYIKAHGEG SWRSLPKAAG LLRCGKSCRL RWMNYLRPDL KRGNFTEDDD  180
ELIIKLHALL GNKWSLIAGQ LPGRTDNEIK NYWNTHIKRK LLSRGIDPQT HRPISGGSAP  240
AASGLTTSST GGFPSAAPAP RLAPRLAIIN VPANVMFAAA AARSAAPSED GQSSSGGSTD  300
APRCPDLNLD LDLSVGPPCS PPKTPAATAS TPTSQPQPQQ QRTHICLCYH LGVRGGEACT  360
CKTASPPAFR FLRPLEEGQN I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-291192217108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00171.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0354471e-167BT035447.1 Zea mays full-length cDNA clone ZM_BFb0063G11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456719.11e-162myb-related protein 308
SwissprotP813931e-90MYB08_ANTMA; Myb-related protein 308
TrEMBLC5XRB41e-160C5XRB4_SORBI; Uncharacterized protein
STRINGSb03g041360.11e-161(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-85myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]