PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00169.1.g00410.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22263.4 Da PI: 4.5754 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.1 | 2.4e-09 | 74 | 102 | 27 | 55 |
AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55 +++r++lg++ tae+Aa+a+++a++ + g Zpz_sc00169.1.g00410.1.am.mk 74 RKTRIWLGTYATAEDAARAYDEAARLMSG 102 369*********************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.34 | 43 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-14 | 59 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-12 | 68 | 111 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-18 | 74 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-5 | 74 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.40E-14 | 75 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MQQGRVDTQP AHLADTYAPD LETADRRHAE AAEVQGSEAE ALGLLGLRDP PPAPVNFSSF 60 RGPAFLTWHA CLPRKTRIWL GTYATAEDAA RAYDEAARLM SGPAARTNFP ATATGVLSPA 120 MRAKLEKYCT ESSTTPQQDE AIANASGTAE RGARQKGDDD AKENKDDRDE DHIDEMISEL 180 TYYGPFEIHQ HPSTTTTTAT TSPLD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00169.1.g00410.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606446 | 7e-37 | AL606446.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16, complete sequence. | |||
GenBank | AL606685 | 7e-37 | AL606685.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence. | |||
GenBank | AP014960 | 7e-37 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 7e-37 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855136 | 7e-37 | CR855136.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147J19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680905.1 | 1e-39 | ethylene-responsive transcription factor ERF003 | ||||
Swissprot | Q94AW5 | 6e-22 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | K3ZCS3 | 3e-38 | K3ZCS3_SETIT; Uncharacterized protein | ||||
STRING | Si024352m | 5e-39 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 2e-07 | ERF family protein |
Publications ? help Back to Top | |||
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