PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00166.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Nin-like
Protein Properties Length: 714aa    MW: 78350.5 Da    PI: 7.5267
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00166.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.75.6e-29506557152
                        RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                   aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++
  Zpz_sc00166.1.g00010.1.sm.mk 506 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 557
                                   5899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.939494577IPR003035RWP-RK domain
PfamPF020421.9E-25509557IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MEGGGGGDPR PSVSLARTPS EGDWSLLEQL LSGDNAWFEV ASRSPNSLAS PPPTTAFLAA  60
ADATATNANT AGWLLQTGPS SVRERFDQAL SYIRETQSDG DVLVQLWVPV KGHDGQLLLT  120
TSGQPFTLDQ RSDSLIRFRE VSTKYHFSGD VMSGTPGLPG RVFIGRLPEW SPDVRYFTSH  180
EYPRVSHAQI LDVHGTMGLP VFEKGSYSCL GVIELIMTKQ KLNFTPELNA ICSALQFSSA  240
SYKDALPEIL EVLKAACLIH KLPLAQTWVT CAQQGKRGSR HSDENYRYCI SPIDEACFVN  300
EPRMQNFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS STKLEYPLSH HAKIFNLKGA  360
VAIRLRCTRT GSADFVLEFF LPTDCEALEE QKAVLDSLSG TMRSVCRTLR VVTDKEMENE  420
AVLEMNELNS FTPQGKNRVE ELSFGDNSRD RRGETSWTSL AETSQHESEF AALRMHGLVP  480
SEGQDPSTSG VQRAAEGSKA KKRTKAEKTV SLQVLRQYFA GSLKDAARSL GVCPTTLKRI  540
CRQHGITRWP SRKIKKVDHS LKKLQQIIDS VHGAETAFQL NTLYKDLTNT SISSDNNLSG  600
SITDVTEKAN GLQHYSRSPT APKQNADVSM RVKATFGSEK SLQKTTQQPF LTQDTIPIQD  660
TGSTRVAVPF GMICTPPATT GVSAIIQPAK QVDMWTSGCL GAWRGQQGVW AMDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1499505AKKRTKA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00166.1.g00010.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800527.10.0protein NLP1-like isoform X2
SwissprotQ10S830.0NLP1_ORYSJ; Protein NLP1
TrEMBLA0A3L6QR050.0A0A3L6QR05_PANMI; Protein NLP1 isoform X2
STRINGPavir.Bb02544.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.21e-179Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]