PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00164.1.g00480.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 348aa    MW: 37378.9 Da    PI: 7.5964
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00164.1.g00480.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.9e-21170219255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Zpz_sc00164.1.g00480.1.am.mk 170 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 219
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-30169229No hitNo description
SuperFamilySSF541716.47E-23170229IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-32170229IPR001471AP2/ERF domain
PROSITE profilePS5103223.354170227IPR001471AP2/ERF domain
SMARTSM003805.5E-36170233IPR001471AP2/ERF domain
PfamPF008479.4E-15171219IPR001471AP2/ERF domain
PRINTSPR003673.3E-11171182IPR001471AP2/ERF domain
PRINTSPR003673.3E-11193209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDESCPRAAA APPIRELRCG LFSSPPPFHS PPLRRTPQHP QPPTTTTTTF TVSLSELFRS  60
MAAAIDLSGE ELMRALEPFI RDASAPHGST SVLPHQLPSP TSPFAFHHAA AASYSPYAAG  120
VEGAGQLSPA QMQYIQARLH LQRQAQSVLG PRAQPMKASA AAPQPRPQKL YRGVRQRHWG  180
KWVAEIRLPR NRTRLWLGTF DTAEEAALAY DQAAYRLRGD AARLNFPDNA SSRAPLHSSV  240
DAKLQMLCQN IAASKKASKA GAVAAATSSA PTSNCSSPSS DDASSMSCLE SAESFSPSLS  300
PSPSPEAATV PEMQQLDFSE APWDEAAGFA LTKYPSYEID WDSLLAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20169232468ATERF1
3gcc_A5e-20169232468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00164.1.g00480.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278360.0KJ727836.1 Zea mays clone pUT5789 AP2-EREBP transcription factor (EREB109) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956678.11e-154ethylene-responsive transcription factor RAP2-13
TrEMBLK3ZVQ31e-153K3ZVQ3_SETIT; Uncharacterized protein
STRINGSi030684m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-38ERF family protein