PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00155.1.g00110.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 273aa    MW: 29503.9 Da    PI: 5.8762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00155.1.g00110.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591e-181561248
                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    g+W++eEd++lv +v+q+G ++W++ ++  g+ R++k+c++rw +yl
  Zpz_sc00155.1.g00110.1.sm.mkhc 15 GAWSAEEDQRLVAYVRQHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61
                                    68*****************************99************97 PP
2Myb_DNA-binding50.35.7e-1667112148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg++T++E+ l+++++++lG++ W++Ia+ ++ gRt++++k+ w+++l
  Zpz_sc00155.1.g00110.1.sm.mkhc  67 RGNFTADEEGLIIRLHHELGNR-WSAIAAQLP-GRTDNEIKNVWHTHL 112
                                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.81961IPR017930Myb domain
SuperFamilySSF466891.72E-2812108IPR009057Homeodomain-like
SMARTSM007175.2E-111363IPR001005SANT/Myb domain
PfamPF002491.3E-151561IPR001005SANT/Myb domain
CDDcd001672.00E-111661No hitNo description
PROSITE profilePS5129424.26462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2665116IPR009057Homeodomain-like
SMARTSM007172.7E-1366114IPR001005SANT/Myb domain
PfamPF002497.6E-1567112IPR001005SANT/Myb domain
CDDcd001671.96E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRAPCCEKE GLRWGAWSAE EDQRLVAYVR QHGHPNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TADEEGLIIR LHHELGNRWS AIAAQLPGRT DNEIKNVWHT HLKKRLENAD  120
GGGGRKKQAR KSKTAKKAAQ AAADDVEGAA ASPFTDTAAS PGLSSSGVAC STATESTAAA  180
SSVDNAATTS ASRQVAVKAE EIESFSTAEF PPIDESFLTS AEVIDMDLGA MDEELGLASS  240
APSTGDHEDM EFWLQMLLES GDMSSGVERH VNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24151178109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00155.1.g00110.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837681e-137BT083768.1 Zea mays full-length cDNA clone ZM_BFb0037L06 mRNA, complete cds.
GenBankKJ7268981e-137KJ726898.1 Zea mays clone pUT3443 MYB transcription factor (MYB121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798367.11e-122transcription factor MYB30-like
SwissprotQ7XBH49e-76MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A0A9PE011e-127A0A0A9PE01_ARUDO; Uncharacterized protein
STRINGPavir.J09313.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-69myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]