PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00151.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 296aa    MW: 32904.2 Da    PI: 5.0609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00151.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.9e-142774148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT +Ed  l+  v   G g+W+  ar  g++Rt+k+c++rw++yl
  Zpz_sc00151.1.g00050.1.am.mk 27 RGPWTVDEDAVLASHVSARGEGRWNELARAAGLRRTGKSCRLRWLNYL 74
                                  89********************************************97 PP
2Myb_DNA-binding48.91.5e-1580123146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg +T+ E++l ++++ ++G++ W++Ia++++ gRt++++k++w++
  Zpz_sc00151.1.g00050.1.am.mk  80 RGDFTPREQLLVLELHSRWGNR-WSRIAAHLP-GRTDNEVKNYWRT 123
                                   899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5852274IPR017930Myb domain
SuperFamilySSF466891.05E-2825121IPR009057Homeodomain-like
SMARTSM007173.5E-102676IPR001005SANT/Myb domain
PfamPF002494.2E-122774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-192881IPR009057Homeodomain-like
CDDcd001671.47E-72974No hitNo description
PROSITE profilePS5129421.8175129IPR017930Myb domain
SMARTSM007172.8E-1479127IPR001005SANT/Myb domain
PfamPF002491.1E-1480123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2382127IPR009057Homeodomain-like
CDDcd001676.51E-1183123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEGLWMGSYD WTTAATSEVD DAAELRRGPW TVDEDAVLAS HVSARGEGRW NELARAAGLR  60
RTGKSCRLRW LNYLRPGVRR GDFTPREQLL VLELHSRWGN RWSRIAAHLP GRTDNEVKNY  120
WRTRVQKHAR QLGCDVGSRR FHDVMRNHWL PRLVERIYTD SAAAVDDHDA SASHPAAVPS  180
LTAGQSVAPA PPNNCGGLVE PCASSDASSA TTGQSSSDSS HEAQFQTDSP IMTAAGTDCW  240
SSTEQCQYDM LDGSWSDLLA RASHDESDSA ELHDLELDEA VVNFWSLDDI WLQQLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-242412724126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00151.1.g00050.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9524381e-139EU952438.1 Zea mays clone 1280407 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817284.11e-114transcription factor JAMYB-like
SwissprotQ2QZJ82e-77JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A2S3HVZ61e-113A0A2S3HVZ6_9POAL; Uncharacterized protein
STRINGPavir.Eb01219.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-71myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]