PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00149.1.g00460.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 299aa    MW: 33126.3 Da    PI: 8.6145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00149.1.g00460.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-111448136
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                                  +g+WT+eEde+lv  v+++G g+W++ +++ g  Rt
  Zpz_sc00149.1.g00460.1.sm.mk 14 KGPWTPEEDEILVAHVQRFGHGNWRALPKRAG-ERT 48
                                  79******************************.898 PP
2Myb_DNA-binding48.52e-1597142148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+ E++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Zpz_sc00149.1.g00460.1.sm.mk  97 RGNFTKAEEDTIIHLHELLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 142
                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-24594IPR009057Homeodomain-like
PROSITE profilePS5129412.116956IPR017930Myb domain
SuperFamilySSF466897.18E-101051IPR009057Homeodomain-like
SMARTSM007171.5E-101393IPR001005SANT/Myb domain
PfamPF002492.7E-91448IPR001005SANT/Myb domain
CDDcd001673.88E-81691No hitNo description
SuperFamilySSF466894.01E-2078147IPR009057Homeodomain-like
PROSITE profilePS5129424.21692146IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2595145IPR009057Homeodomain-like
SMARTSM007176.2E-1496144IPR001005SANT/Myb domain
PfamPF002491.6E-1497142IPR001005SANT/Myb domain
CDDcd001672.49E-1099142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDEILVAHVQ RFGHGNWRAL PKRAGERTQP RLHRLHFSRL  60
AGRRGVLNDE GCVAGLLRCG KSCRLRWINY LRPDIKRGNF TKAEEDTIIH LHELLGNRWS  120
AIAARLPGRT DNEIKNVWHT HLKKRRDPTK QDHHAAPAVG ACSKKKRKPT AAAPKRGGAR  180
KASEEVPGLP ATTAPVSPKR SAVSSSVTES TSMTEQGNTG SSGGFARDES FTSSSEEEFQ  240
IDESFWSETL SMPLESFHVP MDSFDVVPVA SSSSGGNDDM DYWLGVFMET DDVQELPQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-221214525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168KKKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00149.1.g00460.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398843e-89BT039884.1 Zea mays full-length cDNA clone ZM_BFc0049A07 mRNA, complete cds.
GenBankFP0939543e-89FP093954.1 Phyllostachys edulis cDNA clone: bphyem107b06, full insert sequence.
GenBankHQ8587093e-89HQ858709.1 Zea mays clone UT1165 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448188.11e-120transcription factor MYB4
SwissprotQ7XBH41e-102MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A1D8F0K41e-120A0A1D8F0K4_9POAL; MYB protein
STRINGSb06g022660.11e-119(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-68myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]