PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00148.1.g00420.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 118aa MW: 13049.2 Da PI: 5.7034 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 8.8e-11 | 10 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ E e++ +a + +G++ +W +Ia+ +g g+t+ ++k ++ Zpz_sc00148.1.g00420.1.sm.mk 10 TWSWSENERFENALATYGSDtpdRWQRIAAVVGGGKTADDVKRHYE 55 7*******************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.795 | 3 | 58 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.5E-8 | 7 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.33E-10 | 9 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-9 | 9 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-6 | 10 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-5 | 10 | 56 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MSASSRTTTT WSWSENERFE NALATYGSDT PDRWQRIAAV VGGGKTADDV KRHYEELELD 60 IGGITEKGRR RKGRHAGGDG NSNGEIILRL AIARIAEPTT SSDPRHEDDA WTNFKGSE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00148.1.g00420.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797915.1 | 1e-19 | protein RADIALIS-like 3 | ||||
TrEMBL | A0A3L6SDU9 | 1e-20 | A0A3L6SDU9_PANMI; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A3L6TPY8 | 8e-21 | A0A3L6TPY8_PANMI; Protein RADIALIS-like 3 | ||||
STRING | OPUNC03G38540.1 | 2e-20 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 5e-16 | RAD-like 1 |