PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00146.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 877aa    MW: 95709.9 Da    PI: 10.0935
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00146.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82e-113684155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  s++kGV   + +grW A+I+d      r +r++lg+f  +  Aa+a++ a+++++g
  Zpz_sc00146.1.g00020.1.am.mk 36 SRFKGVVPQP-NGRWGAQIYD------RhTRVWLGTFPDEGAAARAYDVAARRYRG 84
                                  6899**8788.8*********......44**********669************98 PP
2B395.73e-30153260199
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                   f+k+ tpsdv+k++rlv+pk++ae+h         g   +++ l +ed++g++W+++++y+ +s++yvltkGW++Fv+++g
  Zpz_sc00146.1.g00020.1.am.mk 153 FEKTVTPSDVGKLNRLVVPKHHAEKHfplkrapdAGTGGKGVLLNFEDSEGKVWRFRYSYWTSSQSYVLTKGWSRFVREKG 233
                                   99*************************999988844445899*************************************** PP

                                   --TT-EEEEEE-SS.SEE..EEEEE-S CS
                            B3  74 LkegDfvvFkldgr.sefelvvkvfrk 99 
                                   +++gD+v+F+++   +e++l++++++k
  Zpz_sc00146.1.g00020.1.am.mk 234 IRAGDTVTFYRSAYgQEKQLLIGFRKK 260
                                   **********99776888889888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-53684IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-153692IPR016177DNA-binding domain
CDDcd000187.05E-113793No hitNo description
SMARTSM003806.1E-253798IPR001471AP2/ERF domain
PROSITE profilePS5103220.4683792IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-203793IPR001471AP2/ERF domain
PRINTSPR003672.4E-63849IPR001471AP2/ERF domain
PRINTSPR003672.4E-67494IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.6E-38149267IPR015300DNA-binding pseudobarrel domain
CDDcd100176.47E-28152245No hitNo description
SuperFamilySSF1019367.32E-30152249IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.7E-25153261IPR003340B3 DNA binding domain
PROSITE profilePS5086314.41153261IPR003340B3 DNA binding domain
PfamPF023621.7E-27153260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MESSTMSAFQ AMDQGSGAGE VAAPEQLPRQ SSSSSSRFKG VVPQPNGRWG AQIYDRHTRV  60
WLGTFPDEGA AARAYDVAAR RYRGREAVLN FPEPEECASD GELAFLHAHS KAEVVDMLRK  120
HTYADELRQG LRRGSGVGAR TRPTPAWARE QLFEKTVTPS DVGKLNRLVV PKHHAEKHFP  180
LKRAPDAGTG GKGVLLNFED SEGKVWRFRY SYWTSSQSYV LTKGWSRFVR EKGIRAGDTV  240
TFYRSAYGQE KQLLIGFRKK QETQDEATAA AIAVESETRV VKLFGADIAT EKQSFASRSF  300
WLAGASTAAV LPAAIDGSAR NGPSEKGELR VETPVVAWNN DHPVTGSFPE LLRAPPPCVR  360
KTDSFFDREP SRPAGVPSNG QGPTSSSPFL QFPRKASALS KSLHHACRWR HTYASLIAAT  420
DVEASRVRGP RPATDVDGRA RSSSATNERK RRAADRQTGP INLQVIQPAT WPLSPAPSSI  480
ITGRSGGWLA RSSCALNVEL AFMACAPSVL HRHAQQLPDR TPALPTSGSE TTSAVQHADW  540
LRACVWQQRP NQPSICSGTY WATSLDSLSA GLVTAWSLRV RSYGPLPLAG PKFDRFTGVD  600
FEAECPCHPA TACFPLPAVR MWTEALPVRP WRLLTSERVK PPLLRLPPAL SPLNFPHPAK  660
PARACGLHTL FLVARLAESM DEYPKCCAAP FLGSQPSLGV LYTCCNSPHI YRLESMLARG  720
RSKLPTPARG RGIHSLPPPS LSHSVRHRLA RSGARQVAPN HPPVPIHEDH DPSIHGAWGT  780
DLVASTAFIG VNRPPSCLFD GGVDRAAARS LTKMTTQLTY LQPAVVLLSR RRRCFVLAKL  840
AVWMDGGGCP ILAFETCGPL LRVDTLAASI VTVSIFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4815026911126DNA-binding protein RAV1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00146.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.13e-87related to ABI3/VP1 1