PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00145.1.g00200.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 289aa    MW: 31657.6 Da    PI: 7.2532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00145.1.g00200.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-093985347
                                    SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                     WTteE + + +a ++   +   +W+++a++++  +t  ++ ++++++
  Zpz_sc00145.1.g00200.1.sm.mkhc 39 TWTTEENKVFEKALALIDRNapdRWEKVAAMLP-SKTVADVMNHYNDL 85
                                    7*****************99*************.***********986 PP
2Myb_DNA-binding44.53.5e-14144188347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT++E++l++ + k++G g+W+ I+r + ++Rt+ q+ s+ qky
  Zpz_sc00145.1.g00200.1.sm.mkhc 144 PWTEDEHKLFLLGLKKYGRGDWRNISRNFVTTRTPTQVASHAQKY 188
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.6283589IPR017884SANT domain
SMARTSM007175.2E-83688IPR001005SANT/Myb domain
SuperFamilySSF466894.59E-113892IPR009057Homeodomain-like
PfamPF002492.5E-73985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-43985IPR009057Homeodomain-like
CDDcd001674.23E-73985No hitNo description
PROSITE profilePS5129417.105137193IPR017930Myb domain
SuperFamilySSF466892.44E-17139193IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-17140191IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-11141187IPR009057Homeodomain-like
SMARTSM007172.3E-12141191IPR001005SANT/Myb domain
PfamPF002491.0E-11144188IPR001005SANT/Myb domain
CDDcd001677.06E-11144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MMAEMWTQML LPTLGSCFAG QSWWPWLDRH AGSGGGGDTW TTEENKVFEK ALALIDRNAP  60
DRWEKVAAML PSKTVADVMN HYNDLENDVG FIEAGLVPFP HYSSSPPASG FTLDYWDGSD  120
GVFRRGCCLK RGRGPDQERK KGVPWTEDEH KLFLLGLKKY GRGDWRNISR NFVTTRTPTQ  180
VASHAQKYFI RLNSGGKDKR RSSIHDITTA NLPLPDDSHG GNASPSPSSA LTTASNPAGA  240
ADQFGTLSDV KPFMPPFPGV SHPYANVKLE PTSSLASGLG FDGNVLLQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1631105276RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00145.1.g00200.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815076.11e-158transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H71e-74DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2T7DED31e-157A0A2T7DED3_9POAL; Uncharacterized protein
STRINGPavir.J16113.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.15e-83Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]