PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00145.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 768aa MW: 82636.6 Da PI: 8.8096 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 118 | 162 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l + v q+G + W+ Ia++++ gR +kqc++rw +yl Zpz_sc00145.1.g00010.1.am.mk 118 SWTEEEDSILREMVLQYGERKWSVIAQCIP-GRIGKQCRERWINYL 162 7*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.6e-17 | 170 | 211 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++WT++Ed l++a+k +G++ W++Ia++++ gR+++ +k++w+ Zpz_sc00145.1.g00010.1.am.mk 170 DAWTEDEDRMLINAHKFYGNR-WSSIAKYLP-GRSENAIKNHWN 211 58*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.003 | 111 | 166 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 112 | 164 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.55E-30 | 114 | 210 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-16 | 115 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 118 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.98E-15 | 118 | 162 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 165 | 215 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.595 | 167 | 218 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-16 | 168 | 216 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 171 | 211 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.84E-14 | 171 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 768 aa Download sequence Send to blast |
MAGRSSVPID EVEAALMADW SPMVYFGSSY HGNDGFQNGM VPASTLAGAD QIMGAPVDVT 60 SLVDSIGMTP AGFEMPEGAL AATDFGVVGG EFPAGGTMSS QQQIGSSKKP PASLKASSWT 120 EEEDSILREM VLQYGERKWS VIAQCIPGRI GKQCRERWIN YLRPNIKQND AWTEDEDRML 180 INAHKFYGNR WSSIAKYLPG RSENAIKNHW NATLRSLKAQ RRMKKRKSEQ VPTGQFSALE 240 EYIRSQWPKD AVPAAPPPLP LSAPQPHLAY GSGLLHPAAH APAAGSATIP TNREMSFHGD 300 NSAAGSANLA GMINLNMPQT LPDPNTISGR QEYYLNYATM YAPAPAPQMH LTPTQDPMQV 360 VSNLDLSPYA EYFALLCPDY GRYNYAGASS SNPAGANGYY NEAGRGAAGA GGGDPAARHT 420 DGVVDGRWRG GRGRQRRWWD GRGRRRRGTG AIGSGDGRTS VVGGGRGWAW WVAAMVGLAH 480 HTSHYHSTAW PSRAENGTDK SNRSLAMWIG GAACVNRRGL EEGMLVSTDG LGGFAQRPTL 540 LDLLLELFGA GLEVVAKHPE LGLCRHVDKN WARVLAWEAY SIIEKAAGPK FAPFVYGFVC 600 APVILLGTGA IVALLFGKSP KSKVFIKYAT VLSIVATVAS VLFALILQDI RLKASSIQFM 660 LKLPSVTLVL EEAGLRGDRV TTSDSAQALN KLQKSVDNLE SKVEDNKREF GQLRSQVDLT 720 MGGLTLVQQE QVQVTKLLRS AHLLPETSSD AGVVGTQSAD TLSGAPAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-36 | 119 | 215 | 7 | 102 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-36 | 84 | 215 | 28 | 156 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-36 | 84 | 215 | 28 | 156 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-36 | 119 | 215 | 7 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 1e-36 | 119 | 215 | 7 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 226 | QRRMKKRK |
2 | 220 | 226 | RRMKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00145.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972257.1 | 1e-111 | transcription factor MYB80 | ||||
TrEMBL | K3XS58 | 1e-109 | K3XS58_SETIT; Uncharacterized protein | ||||
STRING | Si004755m | 1e-110 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 7e-40 | myb domain protein 98 |