PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00144.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 492aa    MW: 53108.7 Da    PI: 5.8087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00144.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-153885148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+ Ed  lvd v+++G g+W+++ r+  + R++k+c++rw ++l
  Zpz_sc00144.1.g00010.1.am.mk 38 KGPWTAAEDAMLVDHVRRHGEGNWNAVQRMTALLRCGKSCRLRWTNHL 85
                                  79******************************99***********996 PP

2Myb_DNA-binding23.99.8e-0891121132
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                                   +g++T++E+ l++++++qlG++ W++ a+++ 
  Zpz_sc00144.1.g00010.1.am.mk  91 KGAFTPDEEFLIAQLHAQLGNK-WARMAAHVS 121
                                   799*******************.******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.7393389IPR017930Myb domain
SMARTSM007171.4E-133787IPR001005SANT/Myb domain
PfamPF002494.9E-133885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-203992IPR009057Homeodomain-like
SuperFamilySSF466891.26E-2239115IPR009057Homeodomain-like
CDDcd001671.17E-104085No hitNo description
PROSITE profilePS500907.13186176IPR017877Myb-like domain
SMARTSM007175.6E-690178IPR001005SANT/Myb domain
PfamPF002491.7E-691121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-1993122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-19163179IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MANNHGAAPT SPDEEKVAGE GRVEQEEAVP AVLAGLKKGP WTAAEDAMLV DHVRRHGEGN  60
WNAVQRMTAL LRCGKSCRLR WTNHLRPNLR KGAFTPDEEF LIAQLHAQLG NKWARMAAHV  120
STSASTSIPD VFRSNGILFS VVSSRILDDM LSLRCVLPQL PGRTDNEIKN YWNTRTKRRQ  180
RAGLPVYPPE VQLQLALSKR CRYDGFSPLA PPQPQLSESS IQTLETGAAA SAGYTSARPA  240
PLDLAQRLAV TTKPTVQFLS PPPFSVPSSP WAKTFARNGR YFQFAHSSPV SPSTPTGPLH  300
PVTPDLSLGY DARGTEQRGL PPLSLSPCPR LELPSNQFSQ PMPPPSASAA AGGFSGGALP  360
DQPNAACLEK MLQELHEAMK VDSPVLVPAN GGPGDAVLER HHGRDDKPEG ELKEDIDTLL  420
DLMIPPFNAE EPAPPAPAPN LSNSISQQSS DDQEPSNVDL EMDLPATGAA SSPDQEWGLD  480
GVCQWSNESR IC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-213617925127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00144.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425371e-86BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds.
GenBankKJ7275321e-86KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982528.10.0myb-related protein P
TrEMBLA0A2S3IL200.0A0A2S3IL20_9POAL; Uncharacterized protein
STRINGPavir.Ib03827.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-59myb domain protein 101