PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00144.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 492aa MW: 53108.7 Da PI: 5.8087 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.6e-15 | 38 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed lvd v+++G g+W+++ r+ + R++k+c++rw ++l Zpz_sc00144.1.g00010.1.am.mk 38 KGPWTAAEDAMLVDHVRRHGEGNWNAVQRMTALLRCGKSCRLRWTNHL 85 79******************************99***********996 PP | |||||||
2 | Myb_DNA-binding | 23.9 | 9.8e-08 | 91 | 121 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g++T++E+ l++++++qlG++ W++ a+++ Zpz_sc00144.1.g00010.1.am.mk 91 KGAFTPDEEFLIAQLHAQLGNK-WARMAAHVS 121 799*******************.******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.739 | 33 | 89 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 37 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-13 | 38 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-20 | 39 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.26E-22 | 39 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.17E-10 | 40 | 85 | No hit | No description |
PROSITE profile | PS50090 | 7.131 | 86 | 176 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.6E-6 | 90 | 178 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-6 | 91 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 93 | 122 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 163 | 179 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MANNHGAAPT SPDEEKVAGE GRVEQEEAVP AVLAGLKKGP WTAAEDAMLV DHVRRHGEGN 60 WNAVQRMTAL LRCGKSCRLR WTNHLRPNLR KGAFTPDEEF LIAQLHAQLG NKWARMAAHV 120 STSASTSIPD VFRSNGILFS VVSSRILDDM LSLRCVLPQL PGRTDNEIKN YWNTRTKRRQ 180 RAGLPVYPPE VQLQLALSKR CRYDGFSPLA PPQPQLSESS IQTLETGAAA SAGYTSARPA 240 PLDLAQRLAV TTKPTVQFLS PPPFSVPSSP WAKTFARNGR YFQFAHSSPV SPSTPTGPLH 300 PVTPDLSLGY DARGTEQRGL PPLSLSPCPR LELPSNQFSQ PMPPPSASAA AGGFSGGALP 360 DQPNAACLEK MLQELHEAMK VDSPVLVPAN GGPGDAVLER HHGRDDKPEG ELKEDIDTLL 420 DLMIPPFNAE EPAPPAPAPN LSNSISQQSS DDQEPSNVDL EMDLPATGAA SSPDQEWGLD 480 GVCQWSNESR IC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-21 | 36 | 179 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00144.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042537 | 1e-86 | BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds. | |||
GenBank | KJ727532 | 1e-86 | KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982528.1 | 0.0 | myb-related protein P | ||||
TrEMBL | A0A2S3IL20 | 0.0 | A0A2S3IL20_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib03827.1.p | 1e-179 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 3e-59 | myb domain protein 101 |