PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00142.1.g00500.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 444aa MW: 47507.1 Da PI: 9.264

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00142.1.g00500.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+ ++++a +++G W++I +++g ++t+ q++s+ qk+ Zpz_sc00142.1.g00500.1.sm.mkhc 60 REKWTEDEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 104 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.07E-15	54	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.732	55	109	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.3E-16	58	107	IPR006447	Myb domain, plants
SMART	SM00717	1.7E-12	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-14	60	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-9	60	100	IPR009057	Homeodomain-like
CDD	cd00167	8.26E-10	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MTCLERKTMA TDENAVGDRA AGENAVDHGN NHPGPGGMDL AGDGDHLPKT RKPYTITKQR 60 EKWTEDEHRR FLEALQLHGR AWRRIQEHIG TKTAVQIRSH AQKFFTKVVT VVRESSGSNG 120 GSGAGAPSIQ IPPPRPKRKP AHPYPRKVDG AAKKHAPTLK RLEKPPVPRM QSLREQDDGS 180 PTSVLTAAQT VLRADAIDCA FSNTWSGGDR SRAPSVVGSD EHGNGGGLSA FCDAKDCAGS 240 EASVFKLFGK KVAVKDSYQH LQNGRNLKID VSPACVTKPT GNAIPCAGAN SWNHPWPGNM 300 QQVMYFLPGP GSFPAQSVMP WLGYNGSMPC SLFYPQAVTS NQQHHIPSES TDPEGSLTGS 360 NTASSVAPAS AAQNSDAVES RAEQGKASES VTKPAVKRLS KCPSSASTNR RGFMPYKRCA 420 AESDAPRSVA PGEEADGELT RLCL

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MTCLERKTMA TDENAVGDRA AGENAVDHGN NHPGPGGMDL AGDGDHLPKT RKPYTITKQR  60
EKWTEDEHRR FLEALQLHGR AWRRIQEHIG TKTAVQIRSH AQKFFTKVVT VVRESSGSNG  120
GSGAGAPSIQ IPPPRPKRKP AHPYPRKVDG AAKKHAPTLK RLEKPPVPRM QSLREQDDGS  180
PTSVLTAAQT VLRADAIDCA FSNTWSGGDR SRAPSVVGSD EHGNGGGLSA FCDAKDCAGS  240
EASVFKLFGK KVAVKDSYQH LQNGRNLKID VSPACVTKPT GNAIPCAGAN SWNHPWPGNM  300
QQVMYFLPGP GSFPAQSVMP WLGYNGSMPC SLFYPQAVTS NQQHHIPSES TDPEGSLTGS  360
NTASSVAPAS AAQNSDAVES RAEQGKASES VTKPAVKRLS KCPSSASTNR RGFMPYKRCA  420
AESDAPRSVA PGEEADGELT RLCL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00142.1.g00500.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814514.1	1e-174	protein REVEILLE 1-like
TrEMBL	A0A1E5VGC7	1e-175	A0A1E5VGC7_9POAL; Protein LHY (Fragment)
STRING	Pavir.Ab02717.1.p	1e-160	(Panicum virgatum)
STRING	Si017289m	1e-161	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2722	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	1e-32	MYB_related family protein