PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00142.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 373aa MW: 39848.2 Da PI: 6.5028 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.3 | 9.8e-12 | 104 | 178 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.......................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas....................kapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P+a+ + + + a+i+ A+e++k+L+ Zpz_sc00142.1.g00020.1.am.mk 104 QRMTHIAVERNRRRQMNEYLAVLRSLMPEAYvqrvrsytpspyfpfyqtdtNHFRLRGDQASIVGGAIEFVKELE 178 79***************************877**************99988888888999999999999999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.90E-12 | 102 | 182 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-15 | 102 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-14 | 102 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.986 | 103 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-9 | 104 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-9 | 109 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MSALVDTLCA PSSDAALIYD TLNAASAANF LFDVNAAAAF CVDGGVALGA APVQQHAVSA 60 PGAGAAVAVA VAAPGDVDAT SSAPRRKRRR RARSCKSMEE AESQRMTHIA VERNRRRQMN 120 EYLAVLRSLM PEAYVQRVRS YTPSPYFPFY QTDTNHFRLR GDQASIVGGA IEFVKELEQQ 180 LQSLEAQKRT LVHQPTPFHS AAATPTTCAV AAVDSTTTTA TSNCSSSVTE DTCSDAPPFA 240 RFFVRPQYVW CHHSPRESTM TMLPVEDGGG RPGVADIEVS LVETHASVRV MAPRRPGQLL 300 GMVTGLQALR LTVLHLTVTT LDALALYSLS LKVEEECGLT TVDDIAAAVH HVLCIIDADA 360 ATQQMLALGA VGH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 90 | RRKRRRR |
2 | 85 | 89 | RKRRR |
3 | 85 | 92 | RKRRRRAR |
4 | 104 | 115 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00142.1.g00020.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357579 | 8e-78 | AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953510.1 | 1e-125 | transcription factor bHLH94 | ||||
TrEMBL | A0A0A9CH21 | 1e-130 | A0A0A9CH21_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ab02502.1.p | 1e-123 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3712 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 7e-40 | bHLH family protein |