PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00141.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 430aa    MW: 47669.8 Da    PI: 4.6878
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00141.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391e-121159149
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  k++en++ r+ t+ kRr g+ K    LS+L++a++av++ +++gk+  +
  Zpz_sc00141.1.g00040.1.am.mk 11 KFVENDRDRSLTYFKRRSGLYKSITDLSTLTGAKAAVVVEGESGKISSF 59
                                  789******************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-11162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.315363IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-8525IPR002100Transcription factor, MADS-box
CDDcd002662.03E-16576No hitNo description
SuperFamilySSF554552.35E-16877IPR002100Transcription factor, MADS-box
PfamPF003191.6E-141359IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-82540IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-84061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MNRRPRRSGI KFVENDRDRS LTYFKRRSGL YKSITDLSTL TGAKAAVVVE GESGKISSFG  60
SPSANAVVEC FLSNSSPANI YVDEAEMARI TYLQDELFHV EKEKTMEEKR VKEPKARVKK  120
IEETSRVGKL LFQDVEKLGA EELSELLQHL ARVQEDIDAR VYADQQVEVS GQQGDPSVPA  180
FSSSSWLPQI NTPPRHLPWA PLHAPSSLHP QSPWGPFLHS SMSYSSLLPP AHIPPPAHTP  240
AIHHQAPIMP PPPTSEAHQY GYYFSQEQPL PQADLDPTYA YAPNVNYFDP VVPLDQNPSA  300
YIQNFNFNPV PPLDQNPAAY ARNFYFDPVL PPQTNQQAIS QNFAADGQPP DVQWTPTSPG  360
NEYYNYQTLY VQMGLTDDNG VQAAAAAGDQ EHVPDPSDGL HQEDDDGSLT MNLWDYSPFR  420
GENPGGGAGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00141.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-12AGAMOUS-like 62