PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00139.1.g00270.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22473.6 Da PI: 5.6112 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.3e-16 | 85 | 129 | 2 | 50 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 y+GVr++ +g Wv+eIr+p++ + r++l ++ tae+Aa+a++aa+ Zpz_sc00139.1.g00270.1.am.mk 85 SYHGVRRRD-WGMWVSEIREPRK---KSRIWLRTYPTAEMAARAHDAAA 129 79****988.**********843...6********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-10 | 84 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-16 | 85 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-22 | 85 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-14 | 85 | 131 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.701 | 85 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-7 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-7 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MEIAGELRAP ITPSSSSSSS NSSSSCAIDT TVTQVLPNAK HDSKTSKRSR RSDSPPAPGS 60 SSGRRQPEHD AAGRRITGCA GRHPSYHGVR RRDWGMWVSE IREPRKKSRI WLRTYPTAEM 120 AARAHDAAAT VSVSLSPAAS GGEAAAGDSE ENAAAFFECL PDLLLDLRDG LMWSADVWAD 180 DAASSVAEEC NDGGDDVFGG VHLWADQFWT |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00139.1.g00270.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ307662 | 7e-40 | AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2. | |||
GenBank | AP005006 | 7e-40 | AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06. | |||
GenBank | AP014958 | 7e-40 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY345232 | 7e-40 | AY345232.1 Oryza sativa transcription factor Rap212 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP48501 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-16 | ERF family protein |