PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00138.1.g00150.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 293aa MW: 32508.3 Da PI: 8.9147

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00138.1.g00150.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.2	2.2e-11	48	71	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ Zpz_sc00138.1.g00150.1.sm.mkhc 48 EPDCSYYMRTGLCRFGMTCKFNHP 71 789********************9 PP
2	zf-CCCH	39.9	6.8e-13	93	117	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Zpz_sc00138.1.g00150.1.sm.mkhc 93 QPECQYYLKTGTCKFGATCKFHHPR 117 589********************96 PP
3	zf-CCCH	40.3	5.4e-13	239	264	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Zpz_sc00138.1.g00150.1.sm.mkhc 239 DQPECQFYMKTGDCKFGAVCKFHHPK 264 689*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	6.0E-5	45	72	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.366	45	73	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.3E-9	48	71	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.02E-5	50	73	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.6E-4	51	71	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-6	90	117	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.939	90	118	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.9E-7	92	119	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-10	94	117	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-5	96	118	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	28	136	160	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.155	136	157	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.7E-5	237	264	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.427	237	265	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-9	239	264	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.05E-5	241	265	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	243	264	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MVVVLEVTTG RTPVNVTLPP GTKVAEAMWQ MNLGEAAESG PYPERVGEPD CSYYMRTGLC 60 RFGMTCKFNH PLDRKLAVAA ARMKGEYPQR TSQPECQYYL KTGTCKFGAT CKFHHPREKA 120 GMANRVQWNS LGYPLRPNEK ECAYYIRTGQ CKFGMTCCNL SWPPSLPRGC NKLALAQIGS 180 SSSDDQQRTS RGAQYYTGSR RSETSGTGDQ GMFSSYQAGS VPVGLYAMPR ENVFPDRPDQ 240 PECQFYMKTG DCKFGAVCKF HHPKDRTIPA PNCALSSIGL PLRPVRVCKV TCI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00138.1.g00150.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012703997.1	1e-148	zinc finger CCCH domain-containing protein 63 isoform X2
Swissprot	Q2R4J4	1e-148	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A0E0J1T9	1e-156	A0A0E0J1T9_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0R897	1e-156	A0A0E0R897_ORYRU; Uncharacterized protein
STRING	ORGLA11G0112800.1	1e-148	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1153	38	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.1	1e-108	zinc finger nuclease 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]