PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00137.1.g00230.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 449aa    MW: 48958.2 Da    PI: 9.1558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00137.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.6e-18145192148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ +++q+G g+W++ +++ g++R++k+c++rw +yl
  Zpz_sc00137.1.g00230.1.am.mk 145 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 192
                                   79********************************************97 PP
2Myb_DNA-binding42.41.6e-13198289148
                                   TSSS-HHHHHHHHHHHHHTTTT.............................................-HHHHHHHHTTTS- CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.............................................tWktIartmgkgRt 36 
                                   rg++T +E++ +++++++lG+                                              +W++Ia +++ +Rt
  Zpz_sc00137.1.g00230.1.am.mk 198 RGKFTLQEEQTIIQLHALLGNSlavphhpcqgagplpppacrpaatltcsvpsllpladrpvlvsfpSWSAIATHLP-KRT 277
                                   89*******************9*******************************************************.*** PP

                                   HHHHHHHHHHHT CS
               Myb_DNA-binding  37 lkqcksrwqkyl 48 
                                   ++++k++w+++l
  Zpz_sc00137.1.g00230.1.am.mk 278 DNEIKNYWNTHL 289
                                   *********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-25137195IPR009057Homeodomain-like
PROSITE profilePS5129425.045140196IPR017930Myb domain
SMARTSM007171.6E-15144194IPR001005SANT/Myb domain
PfamPF002491.2E-16145192IPR001005SANT/Myb domain
SuperFamilySSF466899.39E-23146219IPR009057Homeodomain-like
CDDcd001671.67E-12147192No hitNo description
PROSITE profilePS500908.258193289IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.2E-22196218IPR009057Homeodomain-like
SMARTSM007171.5E-11197291IPR001005SANT/Myb domain
PfamPF002493.9E-11198289IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-7264298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-22265293IPR009057Homeodomain-like
CDDcd001671.88E-6266289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MVARCAPAGY VANPGTADQR VEAHEYARGE YDGCDHESRR AARTGRAPNA VSICQLRWEV  60
RYAVLRLSRR GRRVPRVPAS RMSAGAADWW AKPRVSQGRG RTETQEDSRP TLGRHYPSNL  120
TPRSPAGCYR MGRSPCCEKE AGLKKGPWTP EEDQKLLAYI EQHGHGCWRS LPAKAGLRRC  180
GKSCRLRWTN YLRPDIKRGK FTLQEEQTII QLHALLGNSL AVPHHPCQGA GPLPPPACRP  240
AATLTCSVPS LLPLADRPVL VSFPSWSAIA THLPKRTDNE IKNYWNTHLK KRLAKMGIDP  300
ATHXXXXEAK LRALASPPPG ARGLESPTST LSFSESAALF ATSAPHDGHG AARQPPVLQS  360
YVDAFGEQQT QQQDGFLARA FPDCSVAGAE QGFAATSADP SAGEQEEDKG YWNSILNMVN  420
SSMSTSSSSL ISETVTEQAA YLLAAAAEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-191432935108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00137.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794241e-120HF679424.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB18 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817649.11e-120transcription factor MYB106-like
TrEMBLA0A2S3GQC21e-119A0A2S3GQC2_9POAL; Uncharacterized protein
STRINGPavir.Ab02021.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.24e-75myb domain protein 16