PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00137.1.g00210.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 372aa MW: 40324.5 Da PI: 7.2427 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.4 | 3.4e-54 | 22 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra 77 lppGfrFhPtdeel+++yL++k+++ ++ + +++ e+d++++ePwdLp+++ a ++kewyfF+ +d+ky+tg+r+nra Zpz_sc00137.1.g00210.1.sm.mkhc 22 LPPGFRFHPTDEELITHYLARKAADPRFAA-QAVGEADLNRCEPWDLPARAGAtwGKKEWYFFCIKDRKYPTGQRTNRA 99 79*************************999.88***************6433334899********************* PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 t+sgyWkatgkd+e+++ ++ lvg+kktLvfy+grapkg kt Wvmheyrle Zpz_sc00137.1.g00210.1.sm.mkhc 100 TESGYWKATGKDREIFR-GKVLVGMKKTLVFYTGRAPKGGKTGWVMHEYRLE 150 *****************.99******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-63 | 9 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.117 | 22 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-29 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MEHDAHHHHL QHQQQQAMEM ELPPGFRFHP TDEELITHYL ARKAADPRFA AQAVGEADLN 60 RCEPWDLPAR AGATWGKKEW YFFCIKDRKY PTGQRTNRAT ESGYWKATGK DREIFRGKVL 120 VGMKKTLVFY TGRAPKGGKT GWVMHEYRLE GENSAKGAGS SNLFHSIKSA TSKDEWVLCR 180 VFKKNIEPPS VAGGKRPGSS TFMETADVGP SMSMADELAA ACVLPPLMDV SGSGSGVPTS 240 LSVAAASIDQ LPPPAHVTCF SNALEAQFLN PPFILPSAPA PASAAAHGAV AADHLAMASA 300 SAPFLARVQM QYDGGMVHKL LQGDGGWYGK LGERERLSGA SQDTGVSSEV NPAEISSSRQ 360 HMMNSDASLW DF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-54 | 9 | 185 | 3 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-54 | 9 | 185 | 3 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-54 | 9 | 185 | 3 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-54 | 9 | 185 | 3 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-54 | 9 | 185 | 3 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-54 | 9 | 185 | 3 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00137.1.g00210.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065898 | 1e-129 | BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds. | |||
GenBank | KJ728021 | 1e-129 | KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796322.1 | 1e-172 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A3L6RW05 | 1e-174 | A0A3L6RW05_PANMI; NAC domain-containing protein 92-like | ||||
STRING | Si017567m | 1e-168 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 4e-85 | NAC domain containing protein 80 |