PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00130.1.g00590.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 523aa    MW: 57450.8 Da    PI: 9.3708
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00130.1.g00590.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.48.6e-17855149
                           NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                                  + pGfrFhPtde lv +yL++k+++k+l++ e i+++diyk++PwdLp+
  Zpz_sc00130.1.g00590.1.am.mk  8 MLPGFRFHPTDEKLVRFYLERKIQQKSLPI-ELIRQLDIYKYDPWDLPS 55
                                  579***************************.89**************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-16656IPR003441NAC domain
PROSITE profilePS5100512.8818157IPR003441NAC domain
PfamPF023652.4E-61051IPR003441NAC domain
PROSITE profilePS5122229.976445523IPR013989Development/cell death domain
SMARTSM007672.9E-12445523IPR013989Development/cell death domain
PfamPF105392.1E-22448513IPR013989Development/cell death domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MEKQEEVMLP GFRFHPTDEK LVRFYLERKI QQKSLPIELI RQLDIYKYDP WDLPSAERMS  60
VLSAIPLDLP TGIDITSMVL NAAPTSLQNM SRISTNIEFG QPQHCSSLAT RCTLDLPDIG  120
SSVSVAIQQT RPGAVESDLV GEHVRARCLA MFRVAPFWLH IPRAIYAQRR RCESSREAAL  180
VHLAERVART PRPSTLTTFA DGCTVVLGHG SAGKPAGCSH SAQPMRCNRV RQTAQQSFGC  240
TCAIPSTMPA TDDSERTADV AACATPPRSP GPKPERALVS LLSEGLPNPS LASSSQPSQV  300
RPPDLPFIAG EDTVGDASAA PPPKSKAVAP ESAKPVMFKK RRLVKADLKK MKAATAEASA  360
LSTVDTSAPA AAATPNVVAT ERNHGDISNK KEKMKGKEEE RKQGEDDKTS GKEMVQGREE  420
QRNRAEKRSR TTEKEKEDAK EIGDKGGAGF IFMCSTRTKP ECYRNGVFSL PKEKMEVVEK  480
IRRGAKLFLY DFDLKLMYGV YKATTRGGLD LVRMRLMENS LHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00130.1.g00590.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1964726e-55AC196472.3 Zea mays BAC clone ZMMBBb-235B12 from chromosome 5, complete sequence.
GenBankAP0041146e-55AP004114.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1118_G04.
GenBankAP0149586e-55AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126106e-55CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.13e-23NAC family protein