PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00120.1.g00200.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Nin-like | ||||||||
Protein Properties | Length: 719aa MW: 80666.9 Da PI: 4.9728 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.3 | 1.5e-28 | 602 | 652 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Zpz_sc00120.1.g00200.1.sm.mkhc 602 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 652 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.495 | 591 | 672 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.2E-26 | 604 | 652 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51745 | 15.296 | 644 | 719 | IPR000270 | PB1 domain |
SMART | SM00666 | 9.7E-6 | 644 | 716 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.18E-13 | 661 | 716 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 6.5E-14 | 662 | 717 | No hit | No description |
Pfam | PF00564 | 2.6E-10 | 663 | 715 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MEQKEEDGFL GCGTRMEEEI VVGDMDFMEE LFLAAPGFDF SDFSNPGAGA SPAAAAAFSP 60 LFDICSTTTT ATPPPAQAGE DDREEPAEKA DREGANTQLR PWLFQPRQQE VEATVKERLR 120 RALERIASLS QSQPGELLAQ VWVPTVIGDR QVLTTCGQPF WLDRRNERLA SYRTVSMKYQ 180 FSADESSGAE LGLPGRVFVG RVPEWTPDVR YFSTEEYPRV RHAQHFDIRG SVALPIFEPR 240 TRACLGVVEL VMTTQKINYN AEIENICSAL KEVDLRSTDG SSDPFAKVVD TSYRAILPEI 300 ADVLRTVCER HKLPLAQAWI PCISQAKRGS RHSDEKFCVS TVDEACYVQD PDVRGFHEAC 360 SEHHLFRGEG VVGRAFGTNE PCFYPDITAY SKVEYPLSHH AKLFNLRAAV AIRLRSVRTG 420 SLDFVLEFFL PVDCVKDEEQ RAMLNSLFVT IQQTCYTLRA VSLKELVDEG SIETNLPTQQ 480 EFYDNSVHEN LGELCSGVDV PARTTSLENS EVSSWIASLV DAQNKGVKEI DGDLPFGFTK 540 HEDEGVSVTA GWNTSPVLGP EDSIFSGFKH HEEYEVKEAN CSSPPNTLNL EKTVEKRRTK 600 TEKTVSLEEL RKHFAGSLKE AAKNLGVCPT TLKRICRQHG INRWPSRKIK KVGHSLKKLQ 660 MPSWGFDKLK EEILRRFSIA KENYVDLKYL DDESEWVLLT CDADLLECID VYKSSSAQT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00120.1.g00200.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698190.1 | 0.0 | protein NLP1 isoform X2 | ||||
Swissprot | Q10S83 | 0.0 | NLP1_ORYSJ; Protein NLP1 | ||||
TrEMBL | K4A5H9 | 0.0 | K4A5H9_SETIT; Uncharacterized protein | ||||
STRING | Si034133m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11025 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 1e-163 | Nin-like family protein |
Publications ? help Back to Top | |||
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