PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00120.1.g00200.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Nin-like
Protein Properties Length: 719aa    MW: 80666.9 Da    PI: 4.9728
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00120.1.g00200.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.31.5e-28602652252
                          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                     ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  Zpz_sc00120.1.g00200.1.sm.mkhc 602 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 652
                                     799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.495591672IPR003035RWP-RK domain
PfamPF020423.2E-26604652IPR003035RWP-RK domain
PROSITE profilePS5174515.296644719IPR000270PB1 domain
SMARTSM006669.7E-6644716IPR000270PB1 domain
SuperFamilySSF542771.18E-13661716No hitNo description
Gene3DG3DSA:3.10.20.2406.5E-14662717No hitNo description
PfamPF005642.6E-10663715IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MEQKEEDGFL GCGTRMEEEI VVGDMDFMEE LFLAAPGFDF SDFSNPGAGA SPAAAAAFSP  60
LFDICSTTTT ATPPPAQAGE DDREEPAEKA DREGANTQLR PWLFQPRQQE VEATVKERLR  120
RALERIASLS QSQPGELLAQ VWVPTVIGDR QVLTTCGQPF WLDRRNERLA SYRTVSMKYQ  180
FSADESSGAE LGLPGRVFVG RVPEWTPDVR YFSTEEYPRV RHAQHFDIRG SVALPIFEPR  240
TRACLGVVEL VMTTQKINYN AEIENICSAL KEVDLRSTDG SSDPFAKVVD TSYRAILPEI  300
ADVLRTVCER HKLPLAQAWI PCISQAKRGS RHSDEKFCVS TVDEACYVQD PDVRGFHEAC  360
SEHHLFRGEG VVGRAFGTNE PCFYPDITAY SKVEYPLSHH AKLFNLRAAV AIRLRSVRTG  420
SLDFVLEFFL PVDCVKDEEQ RAMLNSLFVT IQQTCYTLRA VSLKELVDEG SIETNLPTQQ  480
EFYDNSVHEN LGELCSGVDV PARTTSLENS EVSSWIASLV DAQNKGVKEI DGDLPFGFTK  540
HEDEGVSVTA GWNTSPVLGP EDSIFSGFKH HEEYEVKEAN CSSPPNTLNL EKTVEKRRTK  600
TEKTVSLEEL RKHFAGSLKE AAKNLGVCPT TLKRICRQHG INRWPSRKIK KVGHSLKKLQ  660
MPSWGFDKLK EEILRRFSIA KENYVDLKYL DDESEWVLLT CDADLLECID VYKSSSAQT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00120.1.g00200.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698190.10.0protein NLP1 isoform X2
SwissprotQ10S830.0NLP1_ORYSJ; Protein NLP1
TrEMBLK4A5H90.0K4A5H9_SETIT; Uncharacterized protein
STRINGSi034133m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110253241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.11e-163Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]