PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00115.1.g00100.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 303aa    MW: 33009 Da    PI: 5.0167
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00115.1.g00100.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-092332662255
                                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                      +yp++e++ +LA+ +gL+ +q+ +WF N+R ++
  Zpz_sc00115.1.g00100.1.am.mkhc 233 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 266
                                     59*****************************885 PP
2ELK33.11.2e-11186207122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELK++Ll+KYsg+L+ L++EF+
  Zpz_sc00115.1.g00100.1.am.mkhc 186 ELKEMLLKKYSGCLSRLRSEFL 207
                                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-194791IPR005540KNOX1
PfamPF037902.1E-204988IPR005540KNOX1
SMARTSM012562.5E-2595146IPR005541KNOX2
PfamPF037915.4E-2299145IPR005541KNOX2
PROSITE profilePS5121310.423186206IPR005539ELK domain
SMARTSM011883.6E-6186207IPR005539ELK domain
PfamPF037891.4E-8186207IPR005539ELK domain
PROSITE profilePS5007112.438206269IPR001356Homeobox domain
SMARTSM003895.3E-14208273IPR001356Homeobox domain
SuperFamilySSF466891.5E-19208278IPR009057Homeodomain-like
CDDcd000861.18E-14209270No hitNo description
Gene3DG3DSA:1.10.10.604.6E-27212271IPR009057Homeodomain-like
PfamPF059205.0E-17226265IPR008422Homeobox KN domain
PROSITE patternPS000270244267IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEDLYSIHPG ISRAGAAASE ASSGVAGGAG SSQPAPPPPP PPADLTELVK AQIAGHPRYP  60
TLLSAYVECR KVGAPPEVAA LLEEIGRERC AAASTAGEVG LDPELDEFMD AYCRVLERYK  120
EELSRPFDEA ASFLSSVRTQ LSTLCGGSAS LSDEMVGSSE DEPYSGDTDA TELGQQEHSS  180
RLADRELKEM LLKKYSGCLS RLRSEFLKKR TKGKLPKDAR SALMDWWNTH YRWPYPTEED  240
KVRLAAMTGL DPKQINNWFI NQRKRHWKPS EDMRFALMEG VTGGGGSSSG TTTLYFDTGT  300
IGP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00115.1.g00100.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4571180.0AF457118.1 Zea mays knotted1-like homeodomain protein liguleless4a (lg4a) mRNA, complete cds.
GenBankBT0852520.0BT085252.1 Zea mays full-length cDNA clone ZM_BFb0343E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105084.11e-175liguleless 4
SwissprotQ9FP291e-147KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0A9BTH01e-176A0A0A9BTH0_ARUDO; Uncharacterized protein
STRINGGRMZM2G094241_P011e-175(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.17e-87KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]