PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00111.1.g00380.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 666aa    MW: 73493 Da    PI: 10.4056
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00111.1.g00380.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-1773120148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Zpz_sc00111.1.g00380.1.am.mk  73 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 120
                                   79******************************99************97 PP
2Myb_DNA-binding543.8e-17126170147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++T+++del+++++++lG++ W++Ia  ++ gRt++++k++w+++
  Zpz_sc00111.1.g00380.1.am.mk 126 RGNFTEDDDELIIKLHAMLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 170
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2364123IPR009057Homeodomain-like
PROSITE profilePS5129417.24368120IPR017930Myb domain
SMARTSM007174.1E-1472122IPR001005SANT/Myb domain
SuperFamilySSF466898.24E-2972167IPR009057Homeodomain-like
PfamPF002493.8E-1573120IPR001005SANT/Myb domain
CDDcd001674.24E-1175120No hitNo description
PROSITE profilePS5129428.047121175IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-26124175IPR009057Homeodomain-like
SMARTSM007171.5E-16125173IPR001005SANT/Myb domain
PfamPF002492.3E-15126170IPR001005SANT/Myb domain
CDDcd001679.52E-12128171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
LAYEPSVTPA LPGLGKYTEE SRSSRARARS NALPVGSASR QSVLGRSSEE SLRRYAGEAM  60
GRSPCCEKAH TNKGAWTKEE DQRLIAYIKA HGEGCWRSLP KAAGLLRCGK SCRLRWMNYL  120
RPDLKRGNFT EDDDELIIKL HAMLGNKWSL IAGQLPGRTD NEIKNYWNTH IKRKLLSRGI  180
DPQTHRPLGG GGGGAPAASG LTTSSTGXXX XXXXRHQRPG QCVSSSGGST DAPRCPDLNL  240
DLDLSVGQPS SPPKTPAATA STPTSQQQQQ RTALICLCYH LGFRGGEACT CKTASPPAFR  300
FLRPLEEGRW NRIIEKYDIN VFLVDGAGFP LGAPYMPIIT AKINSLTRQY LDTWVAYAAR  360
PPPSCRHRNL DLACPPRSPS HRARPCGRGE AAGHGLMKVH FTRFLSCRSQ GDLRRLPMAT  420
TSGERLGARI GRRRRRTTCD VVVAGWWADD NHRRPPHLTC RRREALCRAP AHFPHTRAPF  480
PGRGCLPRCP RRPGAVTGGK SDRMSSRGPR KLATDDDASG LRSSCELWPA IMWQRPVRTC  540
DFATLPIHPD SGILQLASEQ QEVCCITASS QDDSRRQRVQ QQLWAFCDFL SPPTYVGNHS  600
PTFLYVVRRN AEVVAHRPIR RCRGQIRLNR GPLISMFVHR VAGTFVDFGG PLSPAGAATP  660
EDALKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29731757108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431436RRRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00111.1.g00380.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0354471e-169BT035447.1 Zea mays full-length cDNA clone ZM_BFb0063G11 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-81myb domain protein 4