PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00111.1.g00140.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 404aa    MW: 42088.9 Da    PI: 6.2327
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00111.1.g00140.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-20171220255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Zpz_sc00111.1.g00140.1.sm.mkhc 171 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 220
                                     7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-36171234IPR001471AP2/ERF domain
PfamPF008471.4E-13171220IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-22171229IPR016177DNA-binding domain
PROSITE profilePS5103225.686171228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-32171229IPR001471AP2/ERF domain
PRINTSPR003671.4E-11172183IPR001471AP2/ERF domain
CDDcd000182.63E-14179230No hitNo description
PRINTSPR003671.4E-11194210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MPGALSAQRF DGIVSTPRED SDLYIWEGRR TVLILHARTT LMCFELADPR GSGGAGWSLA  60
KGEGASSEGM AARAAGSGGL MSDSYQAQEM STMVSALTHV VAGGATPRGS GLEQQAMHGG  120
NAYEIGSYPG APSPEFAASE QRSDTQSAGA MAEHHHSASA NTEGPDTPRR RYRGVRQRPW  180
GKWAAEIRDP HKAARVWLGT FETAEAAARA YDEAALRFRG SRAKLNFPED ARLHPASSAA  240
VATPAPTPVE AATTSPAVYA GAAQRASDYL RYQMLLQGTT TGNQGTLLSF YGGGDSGDMG  300
SSYGGSGVTS NPYAGGGSMS TSYGGGGHAS GFLGSYYSFP TSSVTVATVP SSASGQYYSS  360
SQDTQHHGEP AAADWNWESA LAYPATTASW SDSSSQYPPP PHTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23172228663ATERF1
3gcc_A5e-23172228663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00111.1.g00140.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914071e-92FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674780.31e-100ethylene-responsive transcription factor ERF115
TrEMBLA0A1E5WKI71e-109A0A1E5WKI7_9POAL; Uncharacterized protein
STRINGGRMZM2G149756_P012e-99(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-20related to AP2 6