PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00110.1.g00360.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 373aa    MW: 40371.7 Da    PI: 5.4613
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00110.1.g00360.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.3e-051792201055
                                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   + RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Zpz_sc00110.1.g00360.1.sm.mk 179 QVRRERISERMRFLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 220
                                   67******************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.77E-8157224No hitNo description
Gene3DG3DSA:4.10.280.103.2E-12160227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.131169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0012175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-12178234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAQCGGDLLS RRLHQETTVE GLCQGLLDLD EDMFGAMCSA VGYLQEWPDV SGTNLGVAAP  60
DAGNANDDDS CRGGGVRKRK TDSCLDAKVR DLSFFCESDH SDGCKRPRAK QQLISPSDPA  120
CEIAGKGKEE RAKAGTKKKA EVAAGQKTDY IHVRARRGQA TDSHSLAERN SKPNEFNAQV  180
RRERISERMR FLQELVPGCS KVTGKAGMLD EIINYVQSLQ KQVEVLSFHL CFFQLAFSSV  240
LTGRLLPLLL QFLSMKIAAS NPVVSFDIVE DLFGRQLKQA CDTAAPPALA LPDGQLQQSC  300
VQMSPMQQVH LPAGSFGFGL EMVVNSPYPP AAADGSNVSC LDVNGAAATA VWNIASQNFY  360
SGFDAQFQPL ESE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00110.1.g00360.1.sm.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0834864e-58BT083486.1 Zea mays full-length cDNA clone ZM_BFb0002M11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813679.11e-124transcription factor bHLH49-like
TrEMBLA0A0A9CZD01e-138A0A0A9CZD0_ARUDO; Uncharacterized protein
STRINGSi017630m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-40cryptochrome-interacting basic-helix-loop-helix 1