PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00096.1.g00440.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 589aa    MW: 66213.4 Da    PI: 7.7066
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00096.1.g00440.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.76.5e-322513412101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+++++ d++++ ++sw + gnsf+v+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+
  Zpz_sc00096.1.g00440.1.am.mk 251 FLTKTFDLVADPATDGVVSWGRAGNSFIVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFA 322
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   +k F +g+++ll+ ikr++
  Zpz_sc00096.1.g00440.1.am.mk 323 NKGFLRGQRHLLRMIKRRR 341
                                   *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-36247340IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-57247340IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-34247340IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-29251340IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-18251274IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-18289301IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340290314IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-18302314IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MRQAMPASHA LADTAIELHS SSRQDAGAAF LPALRFTSRR RIRSASCSQS RTRTAGPARK  60
ASRGRDRDQK NMARAVAVVV LLSAVDSEIG RGREGSPTCA RRAPISATLP AARTFRARLA  120
TNAPRGLEPS IPLLTSLVLF AVIKRSTRYL APPTATLPEE QRSFFPARDA PNWLSALTKY  180
CSSDSSWFLD TEYGSRLVGR DTMDPEMPGL ATVKEEWPPE EEEEEEEEEV EDAVGAPRPM  240
EGLHEVGPPP FLTKTFDLVA DPATDGVVSW GRAGNSFIVW DPHVFAAVLL PRFFKHNNFS  300
SFVRQLNTYG FRKIDPDRWE FANKGFLRGQ RHLLRMIKRR RPPSYLAASH QQQQQALGSF  360
LEVGHFGLDE EIDRLKRDKN TLLAEVVKLR QEQQSTKADV QAMEERLQHA ETKQVQMMGF  420
LARALQNPDF FQQLLAQHQD SKRKELEDAF SKKRRRPIDV VPFAASSCQT TTNRSEEQYS  480
AFYFGPSGAR EFEELSEPGS SELENRALNI QGLGKRKQDV QPQAASDRNN QVGETAELTD  540
DFWEELLSEG MRGEGELPVP ETERRSRPPG RYVHALEQKL SHLTDSTAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-252493408110Heat shock factor protein 1
5hdn_A3e-252493408110Heat shock factor protein 1
5hdn_B3e-252493408110Heat shock factor protein 1
5hdn_C3e-252493408110Heat shock factor protein 1
5hdn_D3e-252493408110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441455KRKELEDAFSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00096.1.g00440.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057291e-77AC105729.2 Oryza sativa Japonica Group chromosome 3 clone OJ1607A12, complete sequence.
GenBankAK0668441e-77AK066844.1 Oryza sativa Japonica Group cDNA clone:J013088J01, full insert sequence.
GenBankAP0149591e-77AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792158.10.0uncharacterized protein LOC112873415
SwissprotQ8H7Y61e-172HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A1E5WLF60.0A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d
STRINGSi038907m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-99heat shock transcription factor A6B