PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00091.1.g00660.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 188aa MW: 19707.2 Da PI: 10.6024 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.4 | 2.5e-34 | 38 | 130 | 8 | 89 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsss 87 ++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c+++ s s+as s Zpz_sc00091.1.g00660.1.sm.mk 38 SKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSSAPSTSAAS---S 115 79********************************************************8888844442222222222...1 PP TCP 88 g.............k 89 + Zpz_sc00091.1.g00660.1.sm.mk 116 FllgkrprqdvvvaH 130 122223333333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-30 | 37 | 131 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.808 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MASRDDATAT FHVYGALPAA ASTDAVTPAA KKPPSAGSKD RHSKVNGRGR RVRMPIVCAA 60 RVFQLTRELG LKSDGQTIEW LLRQAEPSIL AATGSGTTPA VFSCSSAPST SAASSFLLGK 120 RPRQDVVVAH EAAASPQPPF WAALQARPVA WGLSPAQEQQ AYASVAQGHH LNLLSVLSSA 180 TRPAEESR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00091.1.g00660.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064708 | 5e-96 | AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence. | |||
GenBank | AL663019 | 5e-96 | AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence. | |||
GenBank | AP014960 | 5e-96 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976294.1 | 1e-70 | transcription factor PCF1 | ||||
Swissprot | Q9FTA2 | 1e-41 | TCP21_ARATH; Transcription factor TCP21 | ||||
TrEMBL | A0A0A9DEW8 | 7e-94 | A0A0A9DEW8_ARUDO; Uncharacterized protein | ||||
STRING | Traes_2BL_4B6057E06.1 | 3e-76 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 2e-39 | TCP family protein |
Publications ? help Back to Top | |||
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