PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00090.1.g00130.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 390aa    MW: 42049.8 Da    PI: 4.878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00090.1.g00130.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-20124173255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+G+r+++ +g+W+AeIrdps+     r++lg+++taeeAa+a++a ++k++g
  Zpz_sc00090.1.g00130.1.sm.mkhc 124 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYDTAEEAARAYDAEARKIRG 173
                                     69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-22124182IPR016177DNA-binding domain
SMARTSM003801.1E-37124187IPR001471AP2/ERF domain
CDDcd000181.16E-32124182No hitNo description
Gene3DG3DSA:3.30.730.101.2E-32124182IPR001471AP2/ERF domain
PROSITE profilePS5103224.184124181IPR001471AP2/ERF domain
PRINTSPR003671.2E-11125136IPR001471AP2/ERF domain
PfamPF008472.3E-12125173IPR001471AP2/ERF domain
PRINTSPR003671.2E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MCGGAILSSF IRPSGAAAAA KKKKKQQSRR VTADVLWPGL GRNAGEDFEA DFREFERCLS  60
QDDDVDAGGD DEVPPPAPEW FVFGGAVKPA PVSSRSTVDD VITPKSAQHD APAAKSAKRS  120
RKNQYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTYDTAEEA ARAYDAEARK IRGKKAKVNF  180
PDEGLNGHKS ILKPSAANGT TLAPPSKTCA DEAIGDPRTG DNDLFAMFAF NDTKVPVKPA  240
ETAAFLPPLK PLVPTEKFGT NMLSDQSSNS YGSSSDFGWD DDTMTPDYTS VFAPTNAVPT  300
YAEPAYLQDG PSKKMRNNYG VAVPKGNGAP NLTQNMSGFD PEMKYVQMPY IESSSDVSMD  360
SLLQDDVAQD GASNGDLWSL DELLMAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20124181563ATERF1
3gcc_A4e-20124181563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925AKKKKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00090.1.g00130.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800946.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9P8100.0A0A0A9P810_ARUDO; Uncharacterized protein
STRINGPavir.J01991.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-27related to AP2 12