PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00089.1.g00130.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Nin-like
Protein Properties Length: 796aa    MW: 85085.7 Da    PI: 8.6943
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00089.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.68.9e-27652701352
                        RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                   ++i ++d++kyF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl
  Zpz_sc00089.1.g00130.1.am.mk 652 DQIGFDDIRKYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 701
                                   6899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.087635722IPR003035RWP-RK domain
PfamPF020429.2E-21654701IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
LEASKLLVKR EPSVDEAALQ LPAAARGFLM SHACTVVEAA VSREAVDVAP NPLSPSCLCH  60
VRVHVSSWRL AHGRGGHQGR VGGGSGLGAA MAGNGTGVKG GRLQSGGGGR RLRAEGPKQI  120
GARRTRGPAS SSSSPKLCGA VLHARGSVLL LHFVVGVALL IFVVRLPLRR SSARRPGRCR  180
APCRSPSTAA RSKPLLAASW RVPTAAAFET SPGSHGFGCR RATGDGWGWP AGDGAKDGDE  240
DGRWSGDWLL RRDSSLVGDE LGLGLSVSDD GGCDHGWLGL TKTALGTCED HSTGKLIDDP  300
EAFLRRVRRR EIEPEPMARE AANAPAAGRP HHLATPATMG RHARTRGKLV NARFLRPPSN  360
SDSAARTLLP VLLYPQIFCP CAASVSLSIS AMAMVPYALD GGDADWYPDL DDGFPLLRSS  420
SSPFDISEED NLLSAVAPPD PPRSLIRDSN LEGSDHSPLL LPADFSASSA CLDVISIGWF  480
SRDEDSYRLP MFPAAVPPAA GDQFYFDGLP PLPATIATAG VLDDVLMLQP FSDIDLDAFG  540
GSADVNNAAP PDNNIMIVPS DRPCAAGQVA GVDGLGNKHV ATAADCYHPV AASSFGFNMA  600
VMRHGEHQNQ ASSVVALPPP PPMPRPHHQV RMRSMRSGTD RSAPPAGKTR LDQIGFDDIR  660
KYFYMPITKA AREMNVGLTV LKKRCRELGV ARWPHRKMKS LKSLILNVQE MGKGMSPAAV  720
RRELAALETY CALMEEDPSI ELTDRTKKLR QACFKESYKR RRAAHRFGRA DQLTVQEASS  780
SNDDGCSLQS SHLFSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107GGRLQSGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00089.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039336e-65AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBankAP0042586e-65AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBankAP0149576e-65AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126096e-65CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128882330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.11e-35RWP-RK domain-containing protein