PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00088.1.g00770.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 131aa MW: 14078 Da PI: 4.1717 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 70.3 | 6.7e-22 | 15 | 131 | 6 | 134 |
YABBY 6 sseqvCyvqCnfCntilavsvPsts....lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenl 82 seq+ yvqC+fC+til+vsvPs s l k+v+v+CG C+ +lsv+l ++ + ++++ l l+e +v+ Zpz_sc00088.1.g00770.1.sm.mk 15 LSEQLGYVQCSFCTTILLVSVPSYSdalqLTKTVAVQCGNCAGVLSVTLPPQTPT-PVVE-LRLP-----LQEPGVDPPPR 88 689*******************9875555789***************99886644.4443.2222.....33344444333 PP YABBY 83 ksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134 +s + ++ +++ +l+ e e+v v pv++PP +rqr Psayn+fik Zpz_sc00088.1.g00770.1.sm.mk 89 ESEDGSSG---EDR---ELEA-EAEDV--VFPVNKPPVRRQRTPSAYNCFIK 131 32222222...222...2333.33444..469*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.2E-21 | 16 | 131 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MSSSPECSPC LGILLSEQLG YVQCSFCTTI LLVSVPSYSD ALQLTKTVAV QCGNCAGVLS 60 VTLPPQTPTP VVELRLPLQE PGVDPPPRES EDGSSGEDRE LEAEAEDVVF PVNKPPVRRQ 120 RTPSAYNCFI K |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00088.1.g00770.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958092.1 | 4e-45 | protein YABBY 7 | ||||
Swissprot | A2PZN8 | 8e-24 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A0A368Q749 | 5e-45 | A0A368Q749_SETIT; Uncharacterized protein | ||||
STRING | Si032004m | 1e-45 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 3e-12 | YABBY family protein |