PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00088.1.g00360.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 704aa    MW: 76140.2 Da    PI: 11.123
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00088.1.g00360.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.72.2e-531392671128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sg
  Zpz_sc00088.1.g00360.1.am.mk 139 LPPGFRFHPTDEELVVHYLKKKTASMPLPV-TIIAEVDLYKFDPWELPAKASFGEHEWYFFSPRDRKYPNGARPNRAATSG 218
                                   79****************************.89***************9989999************************** PP

                           NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatg+dk++l++  ++++vg+kk Lvfy+g+ pkg kt+W+mheyrl
  Zpz_sc00088.1.g00360.1.am.mk 219 YWKATGTDKPILASdgSRQKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 267
                                   ************99777788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-63135306IPR003441NAC domain
PROSITE profilePS5100561.565139306IPR003441NAC domain
PfamPF023652.5E-27140267IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MDEDRRTALT RICVAETGRP GFARVTGTAR ARGCGRWLAD TGYGWRRANV SSGERPGPLA  60
SVSGQLSSLH RRKRDPKPPA KIPARITRPP ASPPARPNRH RNKPGPPRRC PTMRSMESTD  120
SSSGSALPQQ KQPGPAPHLP PGFRFHPTDE ELVVHYLKKK TASMPLPVTI IAEVDLYKFD  180
PWELPAKASF GEHEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPIL ASDGSRQKVG  240
VKKALVFYRG KPPKGIKTNW IMHEYRLTDA ASFANTSRPP PGSGGGGKTA ASLRLDDWVL  300
CRIYKKVNKH GEFGDQLRSM ECGEDSVEDA VAAAYHPSTH AAAGNMAIAG GGNYTSLLHH  360
DDNNFLDGLL TVEDGGLSGA ATSSLRQIAA AARAGPAVTK QLLVPASAPF NWLDASAIAI  420
LPSPKRYHGF SREATDGGSS SLSSPAERNH LAAPGAGTID GGTTAAIPTF LNPLGVQVQQ  480
SAAFHHHANI LGTSLPPETA SCAFQNPYQF SGVNWNPPLH ADFHRSTSAS CVAARALYGR  540
QHDRLPAGLP ALPSRSINPS RASKNVAAAH PQQSRRNGMT PRGSLACMAR EAAGVPAAER  600
APRRGRRKIM PPVEESSASV RARQRLFLEG SIISVRRSRC AIERPRLPRS AHRRLSGVSR  660
CAFPDLGSLA RVCGWRRSWL RAWFRFSPRP ALVDAFGPRE ANHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-6712930610168NAC domain-containing protein 19
3swm_B1e-6712930610168NAC domain-containing protein 19
3swm_C1e-6712930610168NAC domain-containing protein 19
3swm_D1e-6712930610168NAC domain-containing protein 19
3swp_A1e-6712930610168NAC domain-containing protein 19
3swp_B1e-6712930610168NAC domain-containing protein 19
3swp_C1e-6712930610168NAC domain-containing protein 19
3swp_D1e-6712930610168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00088.1.g00360.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802635.10.0NAC transcription factor NAM-B2-like
SwissprotA0SPJ91e-160NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLA0A0H4K9990.0A0A0H4K999_MAIZE; NAC transcription factor
TrEMBLA0A0H4KD060.0A0A0H4KD06_MAIZE; NAC transcription factor
STRINGPavir.J08552.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.16e-89NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]