PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00083.1.g00090.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 225aa    MW: 23434.5 Da    PI: 7.878
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00083.1.g00090.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.14.9e-272102199
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ +   ++a+p ++r+++++sl+yeA+ r+ +Pv+
  Zpz_sc00083.1.g00090.1.sm.mkhc   2 SCNGCRVLRKGCSDACVLRPSIkwidgAQPQANATVFVAKFFGRAGL---VAAVPLQHRPALFRSLLYEACGRTINPVS 77 
                                     6*********************9999888899************976...678999*********************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelallke 99 
                                     Ga+g++++++++l+q++ae++l++e
  Zpz_sc00083.1.g00090.1.sm.mkhc  78 GAIGLMWTGHWDLCQAAAEAVLRGE 102
                                     *******************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.6891104IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-21298IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIKWIDGAQ PQANATVFVA KFFGRAGLVA AVPLQHRPAL  60
FRSLLYEACG RTINPVSGAI GLMWTGHWDL CQAAAEAVLR GESLRALSAI PATFTDRDMA  120
GLYGDVGVAA SNSPEHSSSA PSRKRRANNG QYVFAGKVDG CYQPPAAGLP QSCELNLCLT  180
PASPLAGDRR GSGGGASDEY SATTTCEDAG GEAEAGAPTL LNLFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00083.1.g00090.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880021e-119AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982442.11e-109LOB domain-containing protein 37
TrEMBLA0A3L6TGQ71e-111A0A3L6TGQ7_PANMI; LOB domain-containing protein 37-like
STRINGSi037275m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-53LOB domain-containing protein 37