PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00079.1.g00140.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 485aa MW: 52873.7 Da PI: 9.3504 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.8e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++++G+g +W ++++g++R++k+c++rw++yl Zpz_sc00079.1.g00140.1.am.mk 14 KGPWSAEEDAVLKAYIEEHGTGgNWIQLPHKIGLNRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.2 | 1.6e-12 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++eEd + + G++ W+tIa+ ++ gRt++++k++w++ Zpz_sc00079.1.g00140.1.am.mk 70 GFSKEEDRVICSLYISIGSR-WSTIAAQLP-GRTDNDVKNHWNT 111 69******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.57 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.16E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.159 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-7 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MGRAPCCDKA TVKKGPWSAE EDAVLKAYIE EHGTGGNWIQ LPHKIGLNRC GKSCRLRWLN 60 YLRPNIRHGG FSKEEDRVIC SLYISIGSRW STIAAQLPGR TDNDVKNHWN TKLKRRLLGG 120 SRRPRVGERF LLMDAMSSQP QNSFTTSALE RMQLGLGLQR RHERLDSSPA FTLYNYSGSL 180 GATPTWPSPS PSPAASDSSE MWRRQLPRAA STGHSAGFRS HMQSSFSYAC AAGILPESMD 240 GTCTPPMSTS TSEIAAVGME SSSSTPTASS GASATFGSME DEIDMLLRQF QSFEGDGHGD 300 DVANGLDYFF GELDHVALGG SNGTWSSCST PGVDSVFQDF VQGYDHRPFA DRRSTDLHWK 360 LPRHSLPSPA PVPPPQPSPV ATKRRPLTRH LRLCCIHPKE PRQPLPRPLP PPSPDPCPVA 420 AKRRPLPRIL RFYCPHTEEP RRPCPASHRQ APTPALSPSS AALCLAASAS AAPNPKRTSP 480 TAAAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00079.1.g00140.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063260 | 1e-140 | BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802913.1 | 1e-149 | transcription factor MYB36-like | ||||
TrEMBL | A0A3L6T850 | 1e-149 | A0A3L6T850_PANMI; Transcription factor MYB35-like | ||||
STRING | Pavir.Aa03183.1.p | 1e-154 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13265 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 8e-70 | myb domain protein 36 |