PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00068.1.g00040.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 509aa    MW: 54708.8 Da    PI: 8.6426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00068.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-18143190148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg W++eEde+lv++v+ +G  +W++++++ g+ R++k+c++rw +yl
  Zpz_sc00068.1.g00040.1.am.mk 143 RGLWSPEEDEKLVRYVTVHGHSCWSSVPKHAGLQRCGKSCRLRWINYL 190
                                   788*******************************************97 PP

2Myb_DNA-binding48.91.5e-15196239146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg ++ +E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Zpz_sc00068.1.g00040.1.am.mk 196 RGTFSDQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 239
                                   899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-27134193IPR009057Homeodomain-like
PROSITE profilePS5129418.844138190IPR017930Myb domain
SuperFamilySSF466896.74E-28141237IPR009057Homeodomain-like
SMARTSM007171.8E-13142192IPR001005SANT/Myb domain
PfamPF002496.9E-16143190IPR001005SANT/Myb domain
CDDcd001678.24E-12146190No hitNo description
PROSITE profilePS5129425.203191245IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-24194246IPR009057Homeodomain-like
SMARTSM007173.6E-15195243IPR001005SANT/Myb domain
PfamPF002494.1E-14196239IPR001005SANT/Myb domain
CDDcd001675.99E-11198238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MPTLPSLSFH HNSAYTPNEQ TPKKKGDRGI LHLKLRASTA SAGRLTRRNA STSTTVQHVT  60
FSNDRAASYA APTPTVWASI DRSWVYFSCA SRVPAGRQLP CNASLPIGRD CHNPYTVGGE  120
GRRGRRGRPA MGHHCCSKQK VKRGLWSPEE DEKLVRYVTV HGHSCWSSVP KHAGLQRCGK  180
SCRLRWINYL RPDLKRGTFS DQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC  240
IKKKLIAQGL DPKTHNLLPA SRSLLHGNGA NPSNPTQFHH PNGGSAVAAT TPPFTISSPT  300
KPAFDALTVV PPPEVAPALY DLPNPGMLMP QDQAAVATIP GYPYSDRGHG VLMSFRDQNA  360
GLQGSMDFMN GSSSSSSMDH AVGMQNGNGF SQGMSAAFMD ETAAMWAATA AVEPGMGAGM  420
EMVQQPPPPP PPQELVQGEV VSSPTVMNGG GAVAEKSLDM MDVSSVYSGV GTNAAFDLEL  480
MGPCGLFCSG GGGGCSCSRN DIDHLQWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-321432457108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00068.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040068e-48AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042598e-48AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149638e-48AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126158e-48CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802845.10.0transcription factor MYB83-like
TrEMBLA0A3L6QSH70.0A0A3L6QSH7_PANMI; Transcription factor MYB12-like
STRINGSi030152m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-82myb domain protein 67