PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00068.1.g00040.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 509aa MW: 54708.8 Da PI: 8.6426 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 143 | 190 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++v+ +G +W++++++ g+ R++k+c++rw +yl Zpz_sc00068.1.g00040.1.am.mk 143 RGLWSPEEDEKLVRYVTVHGHSCWSSVPKHAGLQRCGKSCRLRWINYL 190 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 196 | 239 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ +E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ Zpz_sc00068.1.g00040.1.am.mk 196 RGTFSDQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 239 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-27 | 134 | 193 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.844 | 138 | 190 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-28 | 141 | 237 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 142 | 192 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 143 | 190 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.24E-12 | 146 | 190 | No hit | No description |
PROSITE profile | PS51294 | 25.203 | 191 | 245 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 194 | 246 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 195 | 243 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 196 | 239 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.99E-11 | 198 | 238 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MPTLPSLSFH HNSAYTPNEQ TPKKKGDRGI LHLKLRASTA SAGRLTRRNA STSTTVQHVT 60 FSNDRAASYA APTPTVWASI DRSWVYFSCA SRVPAGRQLP CNASLPIGRD CHNPYTVGGE 120 GRRGRRGRPA MGHHCCSKQK VKRGLWSPEE DEKLVRYVTV HGHSCWSSVP KHAGLQRCGK 180 SCRLRWINYL RPDLKRGTFS DQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC 240 IKKKLIAQGL DPKTHNLLPA SRSLLHGNGA NPSNPTQFHH PNGGSAVAAT TPPFTISSPT 300 KPAFDALTVV PPPEVAPALY DLPNPGMLMP QDQAAVATIP GYPYSDRGHG VLMSFRDQNA 360 GLQGSMDFMN GSSSSSSMDH AVGMQNGNGF SQGMSAAFMD ETAAMWAATA AVEPGMGAGM 420 EMVQQPPPPP PPQELVQGEV VSSPTVMNGG GAVAEKSLDM MDVSSVYSGV GTNAAFDLEL 480 MGPCGLFCSG GGGGCSCSRN DIDHLQWDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-32 | 143 | 245 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00068.1.g00040.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004006 | 8e-48 | AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06. | |||
GenBank | AP004259 | 8e-48 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. | |||
GenBank | AP014963 | 8e-48 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 8e-48 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802845.1 | 0.0 | transcription factor MYB83-like | ||||
TrEMBL | A0A3L6QSH7 | 0.0 | A0A3L6QSH7_PANMI; Transcription factor MYB12-like | ||||
STRING | Si030152m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9751 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 5e-82 | myb domain protein 67 |