PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00062.1.g00510.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 582aa    MW: 63964.6 Da    PI: 8.9053
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00062.1.g00510.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.12.8e-0954111149
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpk 49 
                                   lp+G++F+Ptd+el+ e+L++kv+  +        ++++   i+   +i++++P++Lp+
  Zpz_sc00062.1.g00510.1.am.mk  54 LPAGVKFDPTDQELI-EHLEAKVRPGTaaapshplIDEFIPtIEGEdGICYTHPEKLPA 111
                                   799************.99******999777775553333333776646*********94 PP
2NAM55.12.6e-1717327556128
                           NAM  56 kewyfFskrdkkyatgkrknra.............................tksgyWkatgkdkevlskkgelvglkktLv 107
                                    + +fF++ +k+y+tg+rk+r+                              ++ +W++tgk+++v++  g++ g+kk+Lv
  Zpz_sc00062.1.g00510.1.am.mk 173 LSRHFFHRPSKAYTTGTRKRRKiqppsaatsssssapaahqkqqqqqqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILV 252
                                   3679*****************889*********************99988755789************.9999******** PP

                           NAM 108 fy..kgrapkgektdWvmheyrl 128
                                   +y   g+++k++kt+Wvmh+y+l
  Zpz_sc00062.1.g00510.1.am.mk 253 LYtnFGKHRKPQKTNWVMHQYHL 275
                                   **5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-946113IPR003441NAC domain
PROSITE profilePS5100521.46954294IPR003441NAC domain
PfamPF023654.5E-1455275IPR003441NAC domain
SuperFamilySSF1019413.01E-20169195IPR003441NAC domain
SuperFamilySSF1019413.01E-20225294IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDGSASTAAI GSGGGGGHHI PRLGIQEQRK YMSESSCCPR CGHKINRLLD WVGLPAGVKF  60
DPTDQELIEH LEAKVRPGTA AAPSHPLIDE FIPTIEGEDG ICYTHPEKLP ADGRLHHHPS  120
LISSLRKAKQ LVLLVGNGGQ LADTAGVCAH LRTRLHVLID DIHGHAGLTK DGLSRHFFHR  180
PSKAYTTGTR KRRKIQPPSA ATSSSSSAPA AHQKQQQQQQ QQQRSETRWH KTGKTRPVVV  240
AGRQRGCKKI LVLYTNFGKH RKPQKTNWVM HQYHLGEAEE EREGELVVSK IFYQTQPRQC  300
GVAEPSASSS APTVEMSDHA AAAVPVATSS GNAGVAFQGS AVGIDEFNFA QFRSSFEEVG  360
VGASSGQVEA RDEEEVHAVH HHHLQQEHDL QHPYADQEQH RMAAATAAFH IRTPTDPITA  420
LITPPPLLHH GSVVLRPPEQ YDYHHQQQDG RPHQPEKFDG RRTSGLEEET SGGGSKASTD  480
WQYPSFWPSD SQDHHGQYRK NLATKQNAIL STIVSPPSTH HGQPRILFQL QCAHATRRQA  540
TVMRAGLGCF LLFARPRGDA TVASPRHRLI PLYLRGWGVS AL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00062.1.g00510.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966092.11e-175uncharacterized protein LOC101753253
SwissprotQ9M0F81e-82NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A3L6DFR41e-174A0A3L6DFR4_MAIZE; NAC domain-containing protein 73
STRINGSi006435m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.17e-76NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]