PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00060.1.g00340.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 514aa    MW: 55081 Da    PI: 6.9626
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00060.1.g00340.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.5e-12247303155
                             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Zpz_sc00060.1.g00340.1.sm.mkhc 247 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 303
                                     789******************333.44555535555.779999**************98 PP
2AP235.91.9e-11335380755
                             AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Zpz_sc00060.1.g00340.1.sm.mkhc 335 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 380
                                     89999*******988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-14247313IPR016177DNA-binding domain
CDDcd000183.87E-17247313No hitNo description
SMARTSM003809.1E-23248317IPR001471AP2/ERF domain
PROSITE profilePS5103216.963248311IPR001471AP2/ERF domain
PfamPF008471.0E-8248303IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-12248312IPR001471AP2/ERF domain
PRINTSPR003678.5E-6249260IPR001471AP2/ERF domain
PROSITE profilePS5103216.291327388IPR001471AP2/ERF domain
SMARTSM003809.4E-27335394IPR001471AP2/ERF domain
PfamPF008471.9E-6335380IPR001471AP2/ERF domain
CDDcd000185.44E-20336390No hitNo description
SuperFamilySSF541719.15E-15336390IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-15336388IPR001471AP2/ERF domain
PRINTSPR003678.5E-6370390IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MDMNNGWLGF SLSSSAAGRY GDGAGCGGRA SGDHGEGSCS SPAAVSPLVA MPLQSDGSLP  60
YASPGWRHAE AEGPKLEDFM SVTCSNKSGS IHDSSQADHA KYHEVHDLQP LSGSYYYHGH  120
GSGGSSGIDL EINVNAPPIS GHPDHNVLAP QDHHHHFLPH HGQYFLGTPA NPAGPPFGAM  180
PMYNAAPGIG SSMSISGIKS WLREAMYVPE RSSALSLSVA DVPGEPLPAP MPVAARRPAQ  240
TFGQRTSQFR GVTRHRWTGR YEAHLWDNTC RKEGQTRKGR QGGYDKEEKA ARAYDLAALK  300
YWGPSTHINF PLSTYEKELE EMKNMSRQEF IAHLRRHHQH GRWQARIGRV AGNKDLYLGT  360
FSTQEEAAEA YDIAAIKFRG LNAVTNFDIS KYDVKRICAS THLMGGDAAC RRYSPTRPLD  420
GPPELAVVGA DGGTDRSDAP GGDVQGASDN SENSEGHRGA HLLHGLQCAP AMKFEAGEGS  480
GGGNWMTAAA AAAARPVGGV TTVHQLPVFT LWND
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00060.1.g00340.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851155e-83AY685115.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D14 (AP2D14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796834.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3L6SCK60.0A0A3L6SCK6_PANMI; Uncharacterized protein
STRINGSi035073m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.13e-96AP2 family protein