PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00060.1.g00030.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 32193.4 Da PI: 7.8555 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 98 | 148 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +grW+AeIrdp+ + +r +lg++ taeeAa+a+++a+++++g Zpz_sc00060.1.g00030.1.sm.mkhc 98 KKYRGVRYRA-SGRWAAEIRDPR----QgRRAWLGTYCTAEEAARAYDRAARRIRG 148 59******99.7*********94....25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.24E-17 | 98 | 156 | No hit | No description |
SMART | SM00380 | 2.1E-32 | 99 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-21 | 99 | 157 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-11 | 99 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.669 | 99 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 99 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-7 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-7 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MCGGAILSDL TPSRVHRRLT AATLWPETQR ITTRSTTAGG KRKADDGDLT DEFEAEFQLF 60 EDDDGEEEES LAPLLAGASV PSRPNKKPRV AAGPERGKKY RGVRYRASGR WAAEIRDPRQ 120 GRRAWLGTYC TAEEAARAYD RAARRIRGKS ARLNFPLPHE GHRRAPVIDL NLPAASDDTI 180 TMDVDAASSG DICHPVMGGA EAMAITLMRV KELVTHQGPH DELLASAVSE LTNGAATVCS 240 EARAIGASRY AALICECNRQ MEQIAALKRD LERHEGQLLA RREKLVRMIS PALD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-18 | 96 | 157 | 2 | 64 | ATERF1 |
3gcc_A | 4e-18 | 96 | 157 | 2 | 64 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00060.1.g00030.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037071 | 2e-60 | BT037071.1 Zea mays full-length cDNA clone ZM_BFb0153L12 mRNA, complete cds. | |||
GenBank | KJ727548 | 2e-60 | KJ727548.1 Zea mays clone pUT5408 AP2-EREBP transcription factor (EREB179) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985472.1 | 5e-95 | ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | K4ADI1 | 1e-93 | K4ADI1_SETIT; Uncharacterized protein | ||||
STRING | Si036647m | 2e-87 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13664 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 1e-23 | related to AP2 12 |