PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00058.1.g00290.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 86aa MW: 9605.88 Da PI: 10.5475 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 53.3 | 7.5e-17 | 15 | 45 | 47 | 77 |
SSEEETTT--SS--S-STTTT-------S-- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 +rfh l+efDe+krsCr+rLa+hn+rrrk++ Zpz_sc00058.1.g00290.1.sm.mk 15 GRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 45 7****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 13.528 | 1 | 44 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 8.0E-6 | 15 | 31 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.2E-10 | 15 | 43 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.42E-13 | 15 | 46 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MNLAYLYVLN LYTYGRFHVL TEFDEAKRSC RKRLAEHNRR RRKPAAAADG GTSPAAKKLN 60 SGAIISSYTT DNKSKHLSSG PASIYQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 43 | KRSCRKRLAEHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00058.1.g00290.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF447886 | 1e-30 | KF447886.1 Triticum aestivum squamosa promoter-binding-like protein 22 (SPL22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437398.1 | 4e-21 | squamosa promoter-binding-like protein 10 | ||||
Swissprot | Q0E3F8 | 2e-12 | SPL5_ORYSJ; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A453T2P0 | 2e-20 | A0A453T2P0_AEGTS; Uncharacterized protein | ||||
STRING | BRADI1G31390.1 | 4e-21 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP41746 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 8e-12 | squamosa promoter-binding protein-like 12 |