PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00056.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 492aa    MW: 53170.7 Da    PI: 9.0772
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00056.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.82.9e-27165273199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal.....peeeredamsslvyeAearard 71 
                                   +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a       +  r+++++sl+yeA+ r+ +
  Zpz_sc00056.1.g00020.1.am.mk 165 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAPgggagADGLRPAVFRSLLYEACGRIVN 245
                                   6**************************************************996666556677****************** PP

                        DUF260  72 PvyGavgvilklqqqleqlkaelallke 99 
                                   PvyG+vg+++++q+q +q+++e++l +e
  Zpz_sc00056.1.g00020.1.am.mk 246 PVYGSVGLLWSGQWQACQAAVEAVLKGE 273
                                   **********************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.52164275IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-22165269IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MTECEPSAIW GGSHSRMTRS AITADLLVRE KREDACAAEK QRARRGPHIP RRGQKLWRTD  60
WTRTARRLVG WSVRQHSSEA KQIRNPPTVL AAAQPQEAPK TRAVAVRFPQ NQEPPTRPGF  120
PFPFRSASWL AGWLPTGRDV ETTRGARLRP SPDANGAKPR KMRMSCNGCR VLRKGCSDAC  180
TIRPCLQWIK TPEAQANATV FLAKFYGRAG LLNLLAAPGG GAGADGLRPA VFRSLLYEAC  240
GRIVNPVYGS VGLLWSGQWQ ACQAAVEAVL KGEPLVRVAS AAAVDQPEAA ASPPLGTRAA  300
CDIRHVAKDR DAAAAADLLR VSRAGRTKFK RAATSSTTSR AKAKTTTTTT KPDNGRASPR  360
PGTPTQEQEE LVVVAGSGDE LDDAHAPTSH HDHEESAGSH QHLSDRDRAA AQEGSSEDTE  420
AEAGSHVSQA EEHHSHVHAS LHDEEDEDEE VGLELTLGLE PVVLRQPRSP SCNLRRLSTV  480
SSLMATRLEL PA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00056.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-108EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310953.11e-104LOB domain-containing protein 42-like
TrEMBLI1IL921e-103I1IL92_BRADI; Uncharacterized protein
STRINGBRADI4G16740.11e-104(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.16e-52LOB domain-containing protein 40