PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00055.1.g00700.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 936aa    MW: 102115 Da    PI: 10.8548
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00055.1.g00700.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.5e-4151127278
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   C v+gC+adls+ ++yhrrhkvCe+hsk+p+v+v+g+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+
  Zpz_sc00055.1.g00700.1.am.mk  51 CAVDGCKADLSKGRDYHRRHKVCEAHSKTPTVVVAGREMRFCQQCSRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQP 127
                                   **************************************************************************987 PP
2SRF-TF97.65.3e-31861911151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  Zpz_sc00055.1.g00700.1.am.mk 861 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 911
                                   79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3543112IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18848125IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-3849130IPR004333Transcription factor, SBP-box
PfamPF031102.7E-3151124IPR004333Transcription factor, SBP-box
PROSITE profilePS5006633.193853913IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-41853912IPR002100Transcription factor, MADS-box
CDDcd002651.03E-38854919No hitNo description
SuperFamilySSF554559.16E-29854913IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-31855875IPR002100Transcription factor, MADS-box
PROSITE patternPS003500855909IPR002100Transcription factor, MADS-box
PfamPF003191.1E-25862909IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-31875890IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-31890911IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MPVSWDLADL EHDAGPAVPA SSAAAVVPSA SPLKRPRTGP GGANGPQCPS CAVDGCKADL  60
SKGRDYHRRH KVCEAHSKTP TVVVAGREMR FCQQCSRFHL LAEFDEAKRS CRKRLDGHNR  120
RRRKPQPDNM NSGSFMTTQQ GARFSSFVAP RPEPSWSGII KSEDTSYYAH QVLSNRPLFA  180
GCTSTYSKEG RRFPFLQDGD QVSFGTGGAA SLEVATVCQP LLQTVAAAPP PKSSSSNKIF  240
SPDGFTPVLD SDCALSLLSS PANSSSVDVS RMVQTAEHIP MAQPLVPSLQ QFGSSPSWFS  300
QAASSGVVVS TAGFACPSME SEQMNPVLVP SSDGHEMNYH GIFHVGGEGS SDGTSPPLPL  360
SDNRPQTRLW RERQQSLPAA IRWALAEGPR LRRVTCYPGD GRESLELEKW GFARLPAAVK  420
RTKAPCRAEP ETATRASTAY ARRGSIVAAG GPEPSILDAI KHSCTSRAPR RRHCGLRVAR  480
TGDVRVVPAR RVRFASSPRY MTPWRLRADR SYEEGVHGAL AVARGSCTVG ALRPLARLDE  540
IHGDGAHAKA DAPRHTAAGP PVRPLQCPPA PDGRADKTRA PPSRPAVRSS TALPPSASLV  600
SWPSRVAREN ERAAGKPGLG CESRPPPSDR NRVDTWRGSM IARGQYDVPP HHARARSRRS  660
SASSHTPACV VTGRNIQRRR GTNGSGPAAC RPCFAGTLWD PYRPLVSDGG RRRVREQLGS  720
RLLPLRYTTQ GWDGMEEEKV SRLIQTGELR PVCSNNGKQH LASSRTEPER QRRRLVACEY  780
VRADHGTGLG FRPLGFRVAH HLTQNGKERS VPITPHPFRP AFLTPRRRAI PTRFFCARPP  840
PSRLAAREQG RAMGRGRVEL KRIENKINRQ VTFAKRRNGL LKKAYELSVL CDAEVALIIF  900
SSRGKLYEFC SGQRDVVSRE SSSGPVNLSN EEMLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-2839124184squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107124KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00055.1.g00700.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538751e-100BT053875.1 Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds.
GenBankFP0949131e-100FP094913.1 Phyllostachys edulis cDNA clone: bphyem212i14, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-40SBP family protein