PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00053.1.g00050.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 356aa MW: 38837.1 Da PI: 7.6003 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 174 | 193 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Zpz_sc00053.1.g00050.1.am.mk 174 FSCTVCNKTFNRFNNMQMHM 193 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00018 | 264 | 286 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C Cgk+F + + ++H +++ Zpz_sc00053.1.g00050.1.am.mk 264 YACRRCGKRFAVRGDWRTHEKNC 286 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-5 | 167 | 195 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-5 | 174 | 193 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.201 | 174 | 201 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 174 | 196 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 176 | 196 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 227 | 259 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.02E-6 | 248 | 284 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 250 | 284 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.704 | 264 | 284 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 58 | 264 | 284 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MHSYRAMHPY STHQYHQNHI ASVPSSKHGE DNDDDQSMLR LSLWPPGHHH GMASSPACSS 60 SPSVISSTTS MAAASYPWLN NQGHYSGGGG CGGVGSSSSH RSFLFHEQQQ EPELSISLSI 120 APPRSNAAAA CGGGFAAPAA LSSTVTTVTP GGSQVPSQYW IPSASEILVG STQFSCTVCN 180 KTFNRFNNMQ MHMWGHGSQY RKGSESLRGA ITVGTAPPAS LMRLPCYCCA EGCRNNIDHP 240 RARPLKDFRT LQTHYRRKHG ARPYACRRCG KRFAVRGDWR THEKNCGKLW FCVCGSDFKH 300 KRSLKDHVRS FGGGHAPHIV ESVAVEDDDD EDDDHEDAYQ MDDNGIAGEA TDMVVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00053.1.g00050.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460014.1 | 1e-168 | zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 2e-99 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A3L6E3M8 | 1e-167 | A0A3L6E3M8_MAIZE; Zinc finger protein WIP6 | ||||
STRING | Sb02g020840.1 | 1e-167 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11306 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 5e-99 | C2H2-like zinc finger protein |