PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00050.1.g00810.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 462aa    MW: 50250.2 Da    PI: 6.7898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00050.1.g00810.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.3e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rgrWT+eEd+ l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Zpz_sc00050.1.g00810.1.am.mk 14 RGRWTAEEDKVLASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                                  89******************************99************97 PP

2Myb_DNA-binding28.73.1e-091772012248
                                   T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqkyl 48 
                                   g W++Ia++++ gRt++++k++w+++l
  Zpz_sc00050.1.g00810.1.am.mk 177 G-WSLIASHLP-GRTDNEIKNYWNSHL 201
                                   5.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-22564IPR009057Homeodomain-like
PROSITE profilePS5129421.182965IPR017930Myb domain
SMARTSM007176.3E-121363IPR001005SANT/Myb domain
PfamPF002492.2E-151461IPR001005SANT/Myb domain
SuperFamilySSF466891.68E-201588IPR009057Homeodomain-like
CDDcd001674.65E-101661No hitNo description
Gene3DG3DSA:1.10.10.605.7E-196585IPR009057Homeodomain-like
SMARTSM007173.8E-1066203IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-19174205IPR009057Homeodomain-like
SuperFamilySSF466891.95E-7176206IPR009057Homeodomain-like
PfamPF002493.1E-7177201IPR001005SANT/Myb domain
CDDcd001671.77E-6178201No hitNo description
PROSITE profilePS500906.632178201IPR017877Myb-like domain
PfamPF066401.9E-64219439IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDKVLASYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADVKRGNI SKEEEDIIIK LHATLGNRAG RMESTASGQL ASMVITADRL TEEPISTNLL  120
GAVGARVRRV RSLLLLLLLA CHAVTLEATR VAHAWHGMAC SPDHLTSPRS RFVKYSGWSL  180
IASHLPGRTD NEIKNYWNSH LSRQIHTYRR IYTAGNDTTI TIDITKLHSA EKRRGGRTPG  240
RSRKSRDKIT NSRGKLADPE PEPAEQSGKL EKRVDASSPV AAMSSPPQSD DGARSAVVDP  300
DGPNQRTNSV DVDGNTPGHG GPCSEDATGP VEMEPLDIGL WEAESEMDME ALLLSTTGTG  360
GIGDGSGSFA MGLVDAVGDA PVDDLLDVDW DGFAAHLWGD PGQNEQNDHR ETAQAAEPQA  420
AAGCDPEPEE LESFATWLLR TRRTCAHVSR RFFVERHTGV SG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00050.1.g00810.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283437e-85KJ728343.1 Zea mays clone pUT6624 MYB-related transcription factor (MYBR102) mRNA, partial cds.
GenBankKJ7283957e-85KJ728395.1 Zea mays clone pUT6679 MYB transcription factor (MYB3) mRNA, partial cds.
GenBankZMU570027e-85U57002.1 Zea mays P protein (P) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984641.12e-72myb-related protein P
RefseqXP_025797897.12e-72myb-related protein P-like
SwissprotP278986e-51MYBP_MAIZE; Myb-related protein P
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62610.17e-47myb domain protein 11
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]