PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00050.1.g00810.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 462aa MW: 50250.2 Da PI: 6.7898 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd+ l+ +++++G g+W++ ++ g+ R++k+c++rw +yl Zpz_sc00050.1.g00810.1.am.mk 14 RGRWTAEEDKVLASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 28.7 | 3.1e-09 | 177 | 201 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 g W++Ia++++ gRt++++k++w+++l Zpz_sc00050.1.g00810.1.am.mk 177 G-WSLIASHLP-GRTDNEIKNYWNSHL 201 5.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.182 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.68E-20 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.65E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-19 | 65 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-10 | 66 | 203 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-19 | 174 | 205 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.95E-7 | 176 | 206 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-7 | 177 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.77E-6 | 178 | 201 | No hit | No description |
PROSITE profile | PS50090 | 6.632 | 178 | 201 | IPR017877 | Myb-like domain |
Pfam | PF06640 | 1.9E-64 | 219 | 439 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGRWTAE EDKVLASYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADVKRGNI SKEEEDIIIK LHATLGNRAG RMESTASGQL ASMVITADRL TEEPISTNLL 120 GAVGARVRRV RSLLLLLLLA CHAVTLEATR VAHAWHGMAC SPDHLTSPRS RFVKYSGWSL 180 IASHLPGRTD NEIKNYWNSH LSRQIHTYRR IYTAGNDTTI TIDITKLHSA EKRRGGRTPG 240 RSRKSRDKIT NSRGKLADPE PEPAEQSGKL EKRVDASSPV AAMSSPPQSD DGARSAVVDP 300 DGPNQRTNSV DVDGNTPGHG GPCSEDATGP VEMEPLDIGL WEAESEMDME ALLLSTTGTG 360 GIGDGSGSFA MGLVDAVGDA PVDDLLDVDW DGFAAHLWGD PGQNEQNDHR ETAQAAEPQA 420 AAGCDPEPEE LESFATWLLR TRRTCAHVSR RFFVERHTGV SG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00050.1.g00810.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728343 | 7e-85 | KJ728343.1 Zea mays clone pUT6624 MYB-related transcription factor (MYBR102) mRNA, partial cds. | |||
GenBank | KJ728395 | 7e-85 | KJ728395.1 Zea mays clone pUT6679 MYB transcription factor (MYB3) mRNA, partial cds. | |||
GenBank | ZMU57002 | 7e-85 | U57002.1 Zea mays P protein (P) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984641.1 | 2e-72 | myb-related protein P | ||||
Refseq | XP_025797897.1 | 2e-72 | myb-related protein P-like | ||||
Swissprot | P27898 | 6e-51 | MYBP_MAIZE; Myb-related protein P |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62610.1 | 7e-47 | myb domain protein 11 |