PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00048.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 337aa    MW: 37730.4 Da    PI: 10.0902
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00048.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-17108155148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Zpz_sc00048.1.g00110.1.am.mk 108 KGAWTKEEDDRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 155
                                   79******************************99************97 PP
2Myb_DNA-binding59.67e-19161205147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Zpz_sc00048.1.g00110.1.am.mk 161 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 205
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.617103155IPR017930Myb domain
SMARTSM007171.9E-13107157IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-29107202IPR009057Homeodomain-like
PfamPF002497.1E-15108155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-23109162IPR009057Homeodomain-like
CDDcd001672.87E-10110155No hitNo description
PROSITE profilePS5129429.411156210IPR017930Myb domain
SMARTSM007176.3E-18160208IPR001005SANT/Myb domain
PfamPF002494.7E-17161205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-28163210IPR009057Homeodomain-like
CDDcd001674.71E-13163206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAWSSHTQLA RASLAYLTLH LPEVPFHGRG PLSPLGDLPI QSSAYKIPRR FTHRSLASQQ  60
HQQQQPPLPC PALPCPALLR NPPRAQGKKA AAKGNQESII TGRAHTNKGA WTKEEDDRLV  120
AYIKAHGEGC WRSLPKAAGL LRCGKSCRLR WINYLRPDLK RGNFTEEEDE LIIKLHSLLG  180
NKWSLIAGRL PGRTDNEIKN YWNTHIRRKL LSRGIDPVTH RPINEHASNI TISFEAARDD  240
KGAVFRREEP KVAAAISRHE PPSHGNWGQG KPHKCPDLNL DLCISPPCQD EPMKPVKREA  300
GLCFSCSLGL PKSTDCKCSN FLGLRTAMLD FRSLEMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2810721026128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00048.1.g00110.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794101e-172HF679410.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB4 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803176.11e-151myb-related protein Hv1-like
SwissprotP200261e-132MYB1_HORVU; Myb-related protein Hv1
TrEMBLA0A0A9D5311e-152A0A0A9D531_ARUDO; Myb31
STRINGPavir.Ba01213.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-92myb domain protein 4