PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00047.1.g00370.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 284aa    MW: 31702.8 Da    PI: 8.217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00047.1.g00370.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-131674148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqkyl 48
                                  +g W++eEde+l+  ++++G  +W++I++  g           + R++k+c++rw++yl
  Zpz_sc00047.1.g00370.1.am.mk 16 KGLWSPEEDERLASHIARFGVSCWSSIPELTGdaldlvflaarLSRCGKSCRLRWLNYL 74
                                  678******************************************************97 PP
2Myb_DNA-binding482.9e-1580122145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   rgr++++E++l++ ++k lG+  W+ Ia++++ gR+++++k++w+
  Zpz_sc00047.1.g00370.1.am.mk  80 RGRFSQQEEDLIIALHKTLGNS-WSQIAARLP-GRSDNEIKNFWN 122
                                   89******************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4751174IPR017930Myb domain
SuperFamilySSF466893.01E-2514121IPR009057Homeodomain-like
SMARTSM007172.6E-101576IPR001005SANT/Myb domain
PfamPF002497.6E-131674IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-201781IPR009057Homeodomain-like
CDDcd001673.90E-81974No hitNo description
PROSITE profilePS5129423.98175129IPR017930Myb domain
SMARTSM007174.3E-1579127IPR001005SANT/Myb domain
PfamPF002498.9E-1480122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2582129IPR009057Homeodomain-like
CDDcd001675.59E-1082122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRVHPCCSP EKKLRKGLWS PEEDERLASH IARFGVSCWS SIPELTGDAL DLVFLAARLS  60
RCGKSCRLRW LNYLRPDLKR GRFSQQEEDL IIALHKTLGN SWSQIAARLP GRSDNEIKNF  120
WNARLRKKLR QKEASSKDHV ASRSRNHRED ERKEPPPAMF NPLLPRDEDH ITCSGAATSS  180
CDDSSAAGSA AAAELQMPSA ASSASASTEA AGDSQDDFLR AMVEDASYLF GDFYLDGSQD  240
GLSSFWDGRY VQCRRAHTVF RLLALPKNAP PSSIYSWLPL MMNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-26312916128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129RLRKKLR
2124130LRKKLRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00047.1.g00370.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817318.11e-106myb-related protein Hv33-like
TrEMBLA0A3L6SVX51e-108A0A3L6SVX5_PANMI; Transcription factor MYB82-like
STRINGPavir.Eb00460.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-56myb domain protein 86